BAC Information

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BAC

Clone NameMSMg01-420A10
Chromosome12 (Build37)
Map Location 94,847,499 - 94,847,908
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream gene2610022K04Rik-ps, EG633639
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420A10.T7 (MSMg01no420_a10.b1)MSMg01-420A10.TJ (MSMg01no420_a10.g1)
ACCAG514989AG514990
length717733
length of high quality
(start - end)
129 (452 - 580)409 (325 - 733)
definitionCHROMAT_FILE: MSMg01no420_a10.b1 PHD_FILE: MSMg01no420_a10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:44 2005CHROMAT_FILE: MSMg01no420_a10.g1 PHD_FILE: MSMg01no420_a10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGGTCAATATTTGCGGCGCTATACGACTCCTATATTCACAGAGGCGCGG
AATTCACTCCTTTTCTCCCCATTCTCGGGGTGTAATAGTGGGGTGATGGG
CAAGCAACGAATCTGTAGCTGTCACGCCATATCAGGTGCTGAAACGTCAC
GCTGCAGGTTATAAAAGCAGCGCCATTTTCCCGGGTCGGAATCTTCCTGA
GAAACAAGCAATAAAGCTCTTGCCGGGGAAGATTCTGGGTTGTTGTGTCT
TTCTTGTCGGGCTAGAACGACACAATAAATTGTGAAAATGCCTCCCGGAG
ATACCGCTGTGAAGTTTATTCTCTCATTAAGAGCCATGGGGAAAGAACTC
CTGGGGATGGGAACCTCCCTGGGCTGGGAAGCCTGGGTTCCATAAAAAAA
CAAGGTGAACCAGGCCAGGGAAACAAGGCAGGAAGTAACATTCCTCCATG
GCCTCTGCATCAGCTCCTGCTTCCTGACCTGCTTGAGTTCCAGTCCTGAC
TTCCTTGGTGATGAACAGCAGTATGGAAGTGTAAGCTGAATAAACCTTTT
CCTTCCCAACTTGCTTCTTGGTCATGATGTTTGTGCAGGAATAGAAACCC
TGACTAAGACACTTTCCTTCTGTTGTGTTTAAAAAAAAAACCGAATAGAT
TAGAACAGAACAGACCAGTAAAGAACAGAAAGGAAAAGAACAAGAAGGCT
TGGATATGTTTGCTGGA
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTAATAATTAAAATGATCTACTGTAAAATAAA
GGGCATAATGCATGCAATATTGGTCCATTTCCAAGAAAGGTAAGGAATTG
ATATATGAAAAGAATTTTACTGTTATACCATAGAGTCAACCTAAAATTTT
GTGATGAATGGAAAATGAAAATTTTAAGTTTATTCATTTTATAGTGTTGT
AATTTTCTAATTTTTAATACTTACCTAGAATACTTTTTAATTTCTTGGAA
AACTTTATTTGAAGATTTTTTTTTATACAGTTATCTTTAAAAAATATTAT
CCACTAATAATTGTTTTTTAAAATAATTTTCACTTTTTTTCAAATCATCT
TTATGGTTTATATGATAGTTGTTCTTAAAAAAATAACAACAATAGCCTCA
TGAGTCACACAGTAAAAAAATTAAATCATAGTACTGTGCTAGATGACTAA
TTAATCTTAAAATACAAAAGCAGCCATTAACAAGCAATTTTGAAGTTTGT
AATCCCTCTAGGGCTGTAAGATACTTGTAAAGTTTTTACTGCTGTAGGAG
CAAATGGAAACTCTTTCCATGTGCAACATGTATTAAAATTTGCATACACA
AATATTGAACATCTGCATAAGCTTCCTATAAACAACTGCAATCTGTTTTG
TCTTATGCATGCCTATCATGAGTGTAGCATGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_a10.g1 MSMg01no420_a10.g1 CHROMAT_FILE:
MSMg01no420_a10.g1 PHD_FILE: MSMg01no420_a10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:44 2005
         (409 letters)



>mm_chr12_94847299_94848108
          Length = 810

 Score =  785 bits (406), Expect = 0.0
 Identities = 409/410 (99%), Gaps = 1/410 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atacagttatctttaaaaaatattatccactaataattgttttttaaaataattttcact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 atacagttatctttaaaaaatattatccactaataattgttttttaaaataattttcact 551

                                                                       
Query: 61  ttttttcaaatcatctttatggtttatatgatagttgttcttaaaaaaataacaacaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 ttttttcaaatcatctttatggtttatatgatagttgttcttaaaaaaataacaacaata 491

                                                                       
Query: 121 gcctcatgagtcacacagt-aaaaaaattaaatcatagtactgtgctagatgactaatta 179
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 gcctcatgagtcacacagtaaaaaaaattaaatcatagtactgtgctagatgactaatta 431

                                                                       
Query: 180 atcttaaaatacaaaagcagccattaacaagcaattttgaagtttgtaatccctctaggg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 atcttaaaatacaaaagcagccattaacaagcaattttgaagtttgtaatccctctaggg 371

                                                                       
Query: 240 ctgtaagatacttgtaaagtttttactgctgtaggagcaaatggaaactctttccatgtg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ctgtaagatacttgtaaagtttttactgctgtaggagcaaatggaaactctttccatgtg 311

                                                                       
Query: 300 caacatgtattaaaatttgcatacacaaatattgaacatctgcataagcttcctataaac 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 caacatgtattaaaatttgcatacacaaatattgaacatctgcataagcttcctataaac 251

                                                             
Query: 360 aactgcaatctgttttgtcttatgcatgcctatcatgagtgtagcatgtc 409
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 aactgcaatctgttttgtcttatgcatgcctatcatgagtgtagcatgtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 810
Length adjustment: 9
Effective length of query: 400
Effective length of database: 801
Effective search space:   320400
Effective search space used:   320400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)