BAC Information

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BAC

Clone NameMSMg01-420G15
Chromosome12 (Build37)
Map Location 99,075,967 - 99,076,187
singlet/doubletsinglet
Overlap genenone
Upstream geneEG628277, LOC382626, LOC100039743, LOC667732
Downstream geneLOC628351, LOC100039770, LOC667746, Galc, Gpr65, Kcnk10, Spata7, Ptpn21, Zc3h14, Eml5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420G15.T7 (MSMg01no420_g15.b1)MSMg01-420G15.TJ (MSMg01no420_g15.g1)
ACCAG515285AG515286
length710769
length of high quality
(start - end)
---221 (64 - 284)
definitionCHROMAT_FILE: MSMg01no420_g15.b1 PHD_FILE: MSMg01no420_g15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:15 2005CHROMAT_FILE: MSMg01no420_g15.g1 PHD_FILE: MSMg01no420_g15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGGTTTTGTAAAACCCCGGGCCCAAGAAAAAAAATAAAAAGGGGGGCAAA
GAGACACTTCCACCGCGGGAAGANGAGATACCCAGAAGGGAAGGAACCGG
AGGNCCANAAAGGACACNACCCCCNCAGGACCAACAACCAAGCACAGCCG
AAAAGCAGCAGGAACAGAAGGAGNGGCCCACACAGGACCAGAAAAGCACG
ACCAGGAAAGGGCAGAGCAAAAAAACGGCCACACCGACAAGCACCAAAAC
ACCGCACGAACAGCCAAGCACACCGACCGGAAACACTATTTTTTTTCACA
ACCTCATCCATTTCTGATGGAAATTACCCAAAGGCTTTTGAAACCCTATT
TTTACCAACGTCTGCTAAAAATAGTTGCACCATTTGTTAAGAGAATATTT
GATACTCTTACCTCCTGATTTGGGTATTGCTCTAAGATATGTTGCACGTC
TCGGCTGATAGTTCTAGAAACTCTAAACATTTCCAGCAAAACTGGAAATT
GGTCCAATTCTCCATGTAGCCTGTTCCCAAGCTGCACTAAATATTAGGCC
CTTGCCGCAGACTAATCCAATATACACAGAATCACTAAGAAGACCTGTGG
ATCGTTCAGGTGACTCCACTAGAAAATGGGGGCCTGTGATGCCAGCCTTG
GACGAACCTGGGGCTTCACTTCACATATGGGGAACATATGAAAAATTGAT
TTCCCCAACA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXACCTACCACACTGTACAAGGCTGTGCTCACCTGGAAGTG
GGCCCTGCTTATTGGGTAGGTAAGGAAAGAAGTATGTGTTCTCTGATGTG
TGGAGAAATCTTACTCTCATGAGGGTCTCTCAGAGCTTTCAGGTTTGCCC
TTTGATCAGTACACAGCCTTGACTGACTCCCTCTGTTGAGTTGCAATATA
TTTTTCCCACTCTGCTCCTAAAAGTCACATCAAGAGTTCCCCTTCATAAG
ACGAGTTAGTATTTTTTTTCTGGAAGAACAGACTATGGGCAGAGTCACAA
AGTGCTTGATATTCACCATAGTCTCACACGCCATCTGGTAATCTCTCTTG
GATCTCCTCCCTACAGTGCCTGATGGAATCCATCTTAGACATGTGCACAA
TACTGGATTTTGACTCCTGTAACTCTATAGCCTCATGTATGCTCCTTTCC
TTATTTGTTAACTGCTATTTTGGTTCGCATTATTTTACATTCTTCTTGCT
CTTCCCTCCTGGTTATACTGAGTCTCCGTTTTCACTGTTCTCATTCAAAT
ACACCCTTGTCTGCTCACCTCTTCCTTTAAGTTTTCAGTGCTACTCCTTT
TGTCATTTCTCTTTTCCCCTCTTGATTTGCCTGATGTTTTCAAGGATCCT
GCGATCACTTATCTTTCTGTTGTTTTTTTGCCGCTTGTACCTATAAACGT
TCTTCTTTTTTTCTCTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_g15.g1 MSMg01no420_g15.g1 CHROMAT_FILE:
MSMg01no420_g15.g1 PHD_FILE: MSMg01no420_g15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:15 2005
         (221 letters)



>mm_chr12_99075767_99076387
          Length = 621

 Score =  397 bits (205), Expect = e-115
 Identities = 217/221 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaccacactgtacaaggctgtgctcacctggaagtgggccctgcttattgggtaggtaa 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ctaccacactgtaccaggctgtgctcacctggaagtgggccctgcttattgggtaggtaa 362

                                                                       
Query: 61  ggaaagaagtatgtgttctctgatgtgtggagaaatcttactctcatgagggtctctcag 120
           ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 361 ggaaagaagtacgtgttctctgatgtgtggagaaatcttactctcaggagggtctctcag 302

                                                                       
Query: 121 agctttcaggtttgccctttgatcagtacacagccttgactgactccctctgttgagttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 agctttcaggtttgccctttgatcagtacacagccttgactgactccctctgttgagttg 242

                                                    
Query: 181 caatatatttttcccactctgctcctaaaagtcacatcaag 221
           |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 241 caatatatttttcccactctgcgcctaaaagtcacatcaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 221
Length of database: 621
Length adjustment: 9
Effective length of query: 212
Effective length of database: 612
Effective search space:   129744
Effective search space used:   129744
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)