BAC Information

Click to search

BAC

Clone NameMSMg01-421A19
Chromosome12 (Build37)
Map Location 5,115,324 - 5,115,806
singlet/doubletsinglet
Overlap geneKlhl29
Upstream geneAdcy3, Cenpo, 2410017P09Rik, Ncoa1, LOC100041995, LOC100042005, LOC100042014, Itsn2, 4930417G10Rik, A830093I24Rik, Pfn4, EG626534, 0610009D07Rik, Fkbp1b, BC068281, Gm1964, Ubxd4, Atad2b, LOC668332
Downstream gene2810032G03Rik, LOC435292, LOC100042095, LOC672098
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-421A19.T7 (MSMg01no421_a19.b1)MSMg01-421A19.TJ (MSMg01no421_a19.g1)
ACCAG515770AG515771
length790760
length of high quality
(start - end)
49 (68 - 116)487 (78 - 564)
definitionCHROMAT_FILE: MSMg01no421_a19.b1 PHD_FILE: MSMg01no421_a19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:04 2005CHROMAT_FILE: MSMg01no421_a19.g1 PHD_FILE: MSMg01no421_a19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCATAATTTTTNNCCNTTTTACNAATATTATATTTCCANAATCCGCGNA
ATTCTANATGATATCTCCTATTTTTATTTGCTACCTCATTGCTAAATGTT
TCATATAAAACTGAAAAGGAAAAAATACACAGTCCCACATACAAAAAAAA
AANCAGATGGCTAATGTGACCCGTGNAAGAGCAAAAATAANNANNGACTT
TTTCTGACAAGAAATTACTTAAATAAGTATTATTCTCATTTATATTTTGA
GTGGGTTTGGTTTGAGGAGAGTTTTTTNNTTCTAAAATCCCGTTTTTTTT
TTTTTCCTTTTTTTTTAAAAAATTTTTTTAATTTTTTTTTAAACCCTTTA
AAAAACCCCCCCAATTTTTTTTTCTTCAAAAAAAAATTTTTTAAAAATTT
TCTCCCTAAAAATTTTTTTTCTTTTTTCCTTNTATAATTTTCTNAAACAA
CCAAAAAAAAAAAATTTTTTTTTTTTTTTNNNNTCNCTTTTCNNNNTTTT
TTNTTTTTTTNTNNNCNNNNNNNNNNNNNNNNTNCTTNNNNNNNNNNNNT
ACCCTTTTTCTNNNNNNNNTTNNNNNNTNCNCCNNNCTNNNNTNNTTTTN
NNNNTNCNNNNNNNNNNNNNNCCTTNTTTTTCNNNNNNTNNNNNNNNNNT
TTTTTTTTTTCTTTTTTNNNNTTNCNTTNNTTTNNNNTTTATCTNNTTTC
NTNNNTCTNCNNNNNNTNNNTTCCTTTNTTTTTTNNNNNNNNNNTTNNTN
TCTTCTTTTTTCCCTTCCTCTCTCTCCCTTCCCCCTCCCC
NNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAGTGTCTTTGCCGCAGAGAAGC
CCATTAAATCAGAGCCCTGAGAAAGGTTGCATAGCCATTTTTTTTTTTTT
TCAGAGCTCAAGCAGGAAGCCAGCGAGGTGATAAATGTCCCTGGTCCCAT
TGGTATTTATGACACATACATGATAAAAGACCGGAAAACATTATAAACTC
AGAGCAGCTGGGAATACACTGAGAAAGCCCAGTGATGACTGTGTCATGCA
CACCCAGAGGGTAATTCATCTGGGAGCAGGTATGCTGCATGTGTGCTGAC
ACCGTGGGGACAAATGAGAGCTTTGCACAAACAGCCTCCCCATTGGACGC
TTTGTACAGCCACACCATCCATGAGGTGCCCAGAGCCTGCTTCCCTGACA
GGATTGCTCAGGACTTATCAGTCTGTGCCTGGAGAGGGTCTGACTGGGAC
AGCTTGATGTCATTGCTGAGTCACTGCAGTCTGCTACCACGAGGACCCTT
TCCTCCTCGGAGGTAGGAGACTCGGGCTTTACTATTCAGCTCCTCTCTGA
AGACTCACAGAGACTTCCTGGGTCTGCTCTTCTCTCTAAAGCCTCTTCAG
CCCTGGCAATTCCTACCCTCTGAGATTAACCTAAAATGGCCTGGTCTTTT
GAACAAGCTCAATTAAAGTCTCAAAGTCCTGGAAGCCTCCACTCCCGAAG
GGTCCTCTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no421_a19.g1 MSMg01no421_a19.g1 CHROMAT_FILE:
MSMg01no421_a19.g1 PHD_FILE: MSMg01no421_a19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:04 2005
         (487 letters)



>mm_chr12_5115124_5116006
          Length = 883

 Score =  853 bits (441), Expect = 0.0
 Identities = 474/487 (97%), Gaps = 4/487 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtgtctttgccgcagagaagcccattaaatcagagccctgagaaaggttgcatagcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtgtctttgccgcagagaagcccattaaatcagagccctgagaaaggttgcatagcca 260

                                                                       
Query: 61  ttttttttttttttcagagctcaagcaggaagccagcgaggtgataaatgtccctggtcc 120
           ||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttttttttt----cagagctcaagcaggaagccagcgaggtgataaatgtccctggtcc 316

                                                                       
Query: 121 cattggtatttatgacacatacatgataaaagaccggaaaacattataaactcagagcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 cattggtatttatgacacatacatgataaaagaccggaaaacattataaactcagagcag 376

                                                                       
Query: 181 ctgggaatacactgagaaagcccagtgatgactgtgtcatgcacacccagagggtaattc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ctgggaatacactgagaaagcccagtgatgactgtgtcatgcacacccagagggtaattc 436

                                                                       
Query: 241 atctgggagcaggtatgctgcatgtgtgctgacaccgtggggacaaatgagagctttgca 300
           ||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 437 atctgggagcagggatgctggatatgtgctgacaccgtggggacaaatgagagctttgca 496

                                                                       
Query: 301 caaacagcctccccattggacgctttgtacagccacaccatccatgaggtgcccagagcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 caaacagcctccccattggacgctttgtacagccacaccatccatgaggtgcccagagcc 556

                                                                       
Query: 361 tgcttccctgacaggattgctcaggacttatcagtctgtgcctggagagggtctgactgg 420
            ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 557 agctcccctgacaggattgctcaggaattatcagtctgtgcctggagagggtctgactgg 616

                                                                       
Query: 421 gacagcttgatgtcattgctgagtcactgcagtctgctaccacgaggaccctttcctcct 480
            | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 aaaaacttgatgtcattgctgagtcactgcagtctgctaccacgaggaccctttcctcct 676

                  
Query: 481 cggaggt 487
           |||||||
Sbjct: 677 cggaggt 683


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 883
Length adjustment: 10
Effective length of query: 477
Effective length of database: 873
Effective search space:   416421
Effective search space used:   416421
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)