Query= MSMg01no421_l16.b1 MSMg01no421_l16.b1 CHROMAT_FILE:
MSMg01no421_l16.b1 PHD_FILE: MSMg01no421_l16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:00 2005
(513 letters)
>mm_chr12_45759740_45760652
Length = 913
Score = 851 bits (440), Expect = 0.0
Identities = 493/520 (94%), Gaps = 16/520 (3%)
Strand = Plus / Minus
Query: 5 gaattcagactttacttactcagatcataattctactaccttctgacatgtgtgtttcta 64
|||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 745 gaattcagacttgacagactcagataataattctactaccttctgacatgtgtgtttcta 686
Query: 65 tatgttcacctgccagagtgtgttgataatagcatttattttatagtatattacattaga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tatgttcacctgccagagtgtgttgataatagcatttattttatagtatattacattaga 626
Query: 125 ctgtaagaagccctgcctgacatagtaagtatttgataaatattaa-----------tag 173
|||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 625 ctgtaagaagccctgcctgacatagtaagtatttgataaatattaataggaaaatcttag 566
Query: 174 gtgcagaatacttgattgctgacacagtgggtgttctcatataaatagctcaagatgaat 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gtgcagaatacttgattgctgacacagtgggtgttctcatataaatagctcaagatgaat 506
Query: 234 ttgaggttgaattcactaccaagtgtgaaaaggcagcgacttgctcccttctctaccaat 293
|||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 505 ttgaggttaaattcactaccaagtgtgaaaaggcagcgacttgctcccaactctaccaat 446
Query: 294 atggctagttgcccttgctatttacacttctcagcgttaggccttattttgttgatcaaa 353
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 445 atggctagttgcccttgctatttgcacttctcagcgttaggccttattttgttgatcaaa 386
Query: 354 gtttttattttattttttaatttaatttaatttaatttaattttcattctgaacacagtt 413
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtttttattttattt-----tttaatttaatttaatttaattttcattctgaacacagtt 331
Query: 414 tcacctccctcctctccacccagtacccacccccaactttctcctctatcccaatccact 473
||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||
Sbjct: 330 tcacctccctcctctccacccagtacccatccccaactttcccctctaccccaatccact 271
Query: 474 cctctttcatttctcttcaaaaaaggaatggcttctatgg 513
||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 cctctttcatttctcttcaaaaaaggaatggcttctatgg 231
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space: 454209
Effective search space used: 454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no421_l16.g1 MSMg01no421_l16.g1 CHROMAT_FILE:
MSMg01no421_l16.g1 PHD_FILE: MSMg01no421_l16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:01 2005
(458 letters)
>mm_chr12_45570409_45571261
Length = 853
Score = 801 bits (414), Expect = 0.0
Identities = 443/455 (97%), Gaps = 5/455 (1%)
Strand = Plus / Plus
Query: 4 acttaggacatattcaaactcttaccaggaagggcaaataaccaaatacagtctttttac 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 acttaggacatattcaaactcttaccaggaagggcaaataaccaaatacagtctttttac 263
Query: 64 aaaggaggtttccttcagctgagagtcaaatggtttttctctttcaaatagcttgttcaa 123
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 264 aaaggaggtttccttcagctgatagtcaaatggtttttctctttcaaatagcttgttcaa 323
Query: 124 taaccactggatgagtgaaacaaccattgcacatagagttaggtcaacccattaataatt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 taaccactggatgagtgaaacaaccattgcacatagagttaggtcaacccattaataatt 383
Query: 184 ttgttattaattgagaaaatcaaaattcattgtgaagttatgtgcacttctacaataaaa 243
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttgtta--a---gagaaaatcaaaattcattgtgaagttatgtgcacttctacaataaaa 438
Query: 244 cttaaaccctcacatatggaccctatatctaatgcctatcccatggccatttttattaat 303
|||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||
Sbjct: 439 cttaaaccctcacatatgaaccctatatctaatgcctagcccacggccatttttattaat 498
Query: 304 agacattattgattgcttcttatatactacagagggaacaaggggagctgttgggagtat 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 agacattattgattgcttcttatatactacagagggaacaaggggagctgttgggagtat 558
Query: 364 aaacagacagatgtggcacttgccctttggctacttgcattgcttagttacatacacaca 423
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 559 aaacagacagatgtggcacttgccctttggctacttgcattgctcagttacatacacaca 618
Query: 424 gntctactgctcacatacatgtgtacatgaaatga 458
| |||||||||||||| ||||||||||||||||||
Sbjct: 619 gttctactgctcacattcatgtgtacatgaaatga 653
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 853
Length adjustment: 10
Effective length of query: 448
Effective length of database: 843
Effective search space: 377664
Effective search space used: 377664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
