Query= MSMg01no422_j06.b1 MSMg01no422_j06.b1 CHROMAT_FILE:
MSMg01no422_j06.b1 PHD_FILE: MSMg01no422_j06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:03 2005
(546 letters)
>mm_chr12_37735955_37736900
Length = 946
Score = 806 bits (417), Expect = 0.0
Identities = 513/561 (91%), Gaps = 28/561 (4%)
Strand = Plus / Plus
Query: 5 gaattcctataccctttcatttcgggaagattttagtgtttgttttcagatactaatttt 64
|||||||||||||| ||| ||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 195 gaattcctatacccattcgtttcgggaagattttagtgtttgctttcagatactattttt 254
Query: 65 gaaaataggcaaattataaagtaaatattggactggagagatggcttagtggttaagaga 124
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
Sbjct: 255 gaaaataggcaaattataaagtaaatattgggctggagagatgtcttagtggttaagaaa 314
Query: 125 actgactgctcttctgaaggttctgagttcaaatcccagtaaccacatggtggctcacaa 184
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 315 actgactgctcttctgaaggtcctgagttcaaatcccagaaaccacatggtggctcacaa 374
Query: 185 ccatctgtgatgagatccgatgccctcttctggtgtgtct--ggaaaaaaaaaaaacagc 242
|||||||||||||||||||||||||||||||||||||||| |||||||| | |
Sbjct: 375 ccatctgtgatgagatccgatgccctcttctggtgtgtctggggaaaaaa-------atc 427
Query: 243 tacagtgtacttacatataataaataattaaactttaaaaaaaa---------------- 286
|||||||||||||| |||||||||||| ||||| |||||||||
Sbjct: 428 tacagtgtacttacgtataataaataagtaaac--taaaaaaaaaaaaaaaaaaaaaaac 485
Query: 287 -taaagtaaatattaagaactcacacatgagtcagatgtatatggcccaaatggtaaatt 345
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ctaaagtaaatattaagaactcacacatgagtcagatgtatatggcccaaatggtaaatt 545
Query: 346 ttattacaaataatttttcacagtgtgaacctcatcagcgtcaatgtcgttttcttgata 405
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 546 ttattacaaataatttttcacagtgtgaacctcatcagcgtctatgtcgttttcttgata 605
Query: 406 tgaagtttaaaccaacaaactgtaagcttgacaaacgtctcttcacttgaagagagcctg 465
||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||| ||
Sbjct: 606 tgaagtttaaaccaataaactgtaagcttgacaaacgtctcatcactagaagagagcttg 665
Query: 466 tgtcaggtatttcacttaagagtaacatggacttgtgtaatggtgcatgtatgtttgtat 525
|||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||
Sbjct: 666 tgtcaggtatttcacttaagagtaacatggacctgtgtaatgatgtatgtatgtttgtat 725
Query: 526 gactcagaacttctcaagatt 546
|||||||||||||||||||||
Sbjct: 726 gactcagaacttctcaagatt 746
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space: 501696
Effective search space used: 501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no422_j06.g1 MSMg01no422_j06.g1 CHROMAT_FILE:
MSMg01no422_j06.g1 PHD_FILE: MSMg01no422_j06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:03 2005
(461 letters)
>mm_chr12_37871437_37872297
Length = 861
Score = 849 bits (439), Expect = 0.0
Identities = 454/459 (98%)
Strand = Plus / Minus
Query: 1 caaatcggtaagtaggtactagtgaccaaactagtaaggccaggaaaagggaacctcaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 caaatcggtaagtaggtactagtgaccaaactagtaaggccaggaaaagggaacctcaga 600
Query: 61 agtggtaagagtcaaaccacttgtttgtagagctctgctaactatcccgtgccaacccaa 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 599 agtggtaagagtcaaaccacttgtttgtagagctctgctaactattccgtgccaacccaa 540
Query: 121 cactgcaagaactgctcaagtcaaaccctacaagacagatgtgctcttacaatgacgagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 cactgcaagaactgctcaagtcaaaccctacaagacagatgtgctcttacaatgacgagt 480
Query: 181 aaccagctaggaatgaaagaaaaggtgtaagcacataggaaaagagaatgtgcaagcaga 240
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 479 aaccagctaggaatgaaagaaaaggtgtaagcacatagggaaagagaatgtgcaagcaga 420
Query: 241 tgccttaggaaactgtctagtgactaaggggttgcttaaagtgatatgttaaccaatgat 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tgccttaggaaacagtctagtgactaaggggttgcttaaagtgatatgttaaccaatgat 360
Query: 301 attctcacttactcgtccattttttactctgttgaccagacaatcaattcttaaaacctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 attctcacttactcgtccattttttactctgttgaccagacaatcaattcttaaaacctg 300
Query: 361 gtggacacagagtggtggtgttgatgccaatgtgaagaacagagctagaaattgttgtaa 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 299 gtggacacagagtggtggtgttgatgccaatgtgaagaacagagctagaaattgttttaa 240
Query: 421 gtgggaaaagcagcccccgcttttgtagtgacagatgca 459
||||||||||||| |||||||||||||||||||||||||
Sbjct: 239 gtgggaaaagcagtccccgcttttgtagtgacagatgca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space: 383801
Effective search space used: 383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|