BAC Information

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BAC

Clone NameMSMg01-422J06
Chromosome12 (Build37)
Map Location 37,736,149 - 37,872,095
singlet/doubletdoublet
Overlap geneMeox2
Upstream geneTspan13, EG432649, Bzw2, Ankmy2, 1700108M19Rik, Sostdc1, 4930579E17Rik, LOC638858
Downstream geneA530016O06Rik, LOC100043139, Dgkb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-422J06.T7 (MSMg01no422_j06.b1)MSMg01-422J06.TJ (MSMg01no422_j06.g1)
ACCAG516934AG516935
length736746
length of high quality
(start - end)
546 (38 - 583)461 (69 - 529)
definitionCHROMAT_FILE: MSMg01no422_j06.b1 PHD_FILE: MSMg01no422_j06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:03 2005CHROMAT_FILE: MSMg01no422_j06.g1 PHD_FILE: MSMg01no422_j06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,736,149 - 37,736,700)(37,871,637 - 37,872,095)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTA
TACCCTTTCATTTCGGGAAGATTTTAGTGTTTGTTTTCAGATACTAATTT
TGAAAATAGGCAAATTATAAAGTAAATATTGGACTGGAGAGATGGCTTAG
TGGTTAAGAGAACTGACTGCTCTTCTGAAGGTTCTGAGTTCAAATCCCAG
TAACCACATGGTGGCTCACAACCATCTGTGATGAGATCCGATGCCCTCTT
CTGGTGTGTCTGGAAAAAAAAAAAACAGCTACAGTGTACTTACATATAAT
AAATAATTAAACTTTAAAAAAAATAAAGTAAATATTAAGAACTCACACAT
GAGTCAGATGTATATGGCCCAAATGGTAAATTTTATTACAAATAATTTTT
CACAGTGTGAACCTCATCAGCGTCAATGTCGTTTTCTTGATATGAAGTTT
AAACCAACAAACTGTAAGCTTGACAAACGTCTCTTCACTTGAAGAGAGCC
TGTGTCAGGTATTTCACTTAAGAGTAACATGGACTTGTGTAATGGTGCAT
GTATGTTTGTATGACTCAGAACTTCTCAAGATTGTGTTTAAAAATAACTC
CTGATCCATATGATATGGTGCTTTCTCATTAGCATATAGAGTGGCTTTTG
AGATATTATATGGATGGTGTATACTAATAACTGGANAAATGATTAAGATA
AATACTATGGATTTATTTGTGATGGGGCATTTGATG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCAAATCGGTAAGTAGGTACTAGTGACCAAACT
AGTAAGGCCAGGAAAAGGGAACCTCAGAAGTGGTAAGAGTCAAACCACTT
GTTTGTAGAGCTCTGCTAACTATCCCGTGCCAACCCAACACTGCAAGAAC
TGCTCAAGTCAAACCCTACAAGACAGATGTGCTCTTACAATGACGAGTAA
CCAGCTAGGAATGAAAGAAAAGGTGTAAGCACATAGGAAAAGAGAATGTG
CAAGCAGATGCCTTAGGAAACTGTCTAGTGACTAAGGGGTTGCTTAAAGT
GATATGTTAACCAATGATATTCTCACTTACTCGTCCATTTTTTACTCTGT
TGACCAGACAATCAATTCTTAAAACCTGGTGGACACAGAGTGGTGGTGTT
GATGCCAATGTGAAGAACAGAGCTAGAAATTGTTGTAAGTGGGAAAAGCA
GCCCCCGCTTTTGTAGTGACAGATGCAAGACAACATGGTAGTATATTTGG
CATTTAAATTTTCTTTCTGCTAGTGTTTTCTTAGTCTGGATTCCTGGCTC
TTGCAACAGAATGCTTGTCTTATAGCATTTTTTAATTGCAAAGTTATGAA
AAATATTTGAACTTTTTATGAACCTCCTTGGAAAGGCATAATAAAATTTA
CGTTTTAAAAATTTCCCCTTCACTTTGAAATCGTTTTATAAATAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no422_j06.b1 MSMg01no422_j06.b1 CHROMAT_FILE:
MSMg01no422_j06.b1 PHD_FILE: MSMg01no422_j06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:03 2005
         (546 letters)



>mm_chr12_37735955_37736900
          Length = 946

 Score =  806 bits (417), Expect = 0.0
 Identities = 513/561 (91%), Gaps = 28/561 (4%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctataccctttcatttcgggaagattttagtgtttgttttcagatactaatttt 64
           |||||||||||||| ||| ||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 195 gaattcctatacccattcgtttcgggaagattttagtgtttgctttcagatactattttt 254

                                                                       
Query: 65  gaaaataggcaaattataaagtaaatattggactggagagatggcttagtggttaagaga 124
           ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
Sbjct: 255 gaaaataggcaaattataaagtaaatattgggctggagagatgtcttagtggttaagaaa 314

                                                                       
Query: 125 actgactgctcttctgaaggttctgagttcaaatcccagtaaccacatggtggctcacaa 184
           ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 315 actgactgctcttctgaaggtcctgagttcaaatcccagaaaccacatggtggctcacaa 374

                                                                       
Query: 185 ccatctgtgatgagatccgatgccctcttctggtgtgtct--ggaaaaaaaaaaaacagc 242
           ||||||||||||||||||||||||||||||||||||||||  ||||||||       | |
Sbjct: 375 ccatctgtgatgagatccgatgccctcttctggtgtgtctggggaaaaaa-------atc 427

                                                                       
Query: 243 tacagtgtacttacatataataaataattaaactttaaaaaaaa---------------- 286
           |||||||||||||| |||||||||||| |||||  |||||||||                
Sbjct: 428 tacagtgtacttacgtataataaataagtaaac--taaaaaaaaaaaaaaaaaaaaaaac 485

                                                                       
Query: 287 -taaagtaaatattaagaactcacacatgagtcagatgtatatggcccaaatggtaaatt 345
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ctaaagtaaatattaagaactcacacatgagtcagatgtatatggcccaaatggtaaatt 545

                                                                       
Query: 346 ttattacaaataatttttcacagtgtgaacctcatcagcgtcaatgtcgttttcttgata 405
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 546 ttattacaaataatttttcacagtgtgaacctcatcagcgtctatgtcgttttcttgata 605

                                                                       
Query: 406 tgaagtttaaaccaacaaactgtaagcttgacaaacgtctcttcacttgaagagagcctg 465
           ||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||| ||
Sbjct: 606 tgaagtttaaaccaataaactgtaagcttgacaaacgtctcatcactagaagagagcttg 665

                                                                       
Query: 466 tgtcaggtatttcacttaagagtaacatggacttgtgtaatggtgcatgtatgtttgtat 525
           |||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||
Sbjct: 666 tgtcaggtatttcacttaagagtaacatggacctgtgtaatgatgtatgtatgtttgtat 725

                                
Query: 526 gactcagaacttctcaagatt 546
           |||||||||||||||||||||
Sbjct: 726 gactcagaacttctcaagatt 746


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space:   501696
Effective search space used:   501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no422_j06.g1 MSMg01no422_j06.g1 CHROMAT_FILE:
MSMg01no422_j06.g1 PHD_FILE: MSMg01no422_j06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:03 2005
         (461 letters)



>mm_chr12_37871437_37872297
          Length = 861

 Score =  849 bits (439), Expect = 0.0
 Identities = 454/459 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatcggtaagtaggtactagtgaccaaactagtaaggccaggaaaagggaacctcaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 caaatcggtaagtaggtactagtgaccaaactagtaaggccaggaaaagggaacctcaga 600

                                                                       
Query: 61  agtggtaagagtcaaaccacttgtttgtagagctctgctaactatcccgtgccaacccaa 120
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 599 agtggtaagagtcaaaccacttgtttgtagagctctgctaactattccgtgccaacccaa 540

                                                                       
Query: 121 cactgcaagaactgctcaagtcaaaccctacaagacagatgtgctcttacaatgacgagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 cactgcaagaactgctcaagtcaaaccctacaagacagatgtgctcttacaatgacgagt 480

                                                                       
Query: 181 aaccagctaggaatgaaagaaaaggtgtaagcacataggaaaagagaatgtgcaagcaga 240
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 479 aaccagctaggaatgaaagaaaaggtgtaagcacatagggaaagagaatgtgcaagcaga 420

                                                                       
Query: 241 tgccttaggaaactgtctagtgactaaggggttgcttaaagtgatatgttaaccaatgat 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tgccttaggaaacagtctagtgactaaggggttgcttaaagtgatatgttaaccaatgat 360

                                                                       
Query: 301 attctcacttactcgtccattttttactctgttgaccagacaatcaattcttaaaacctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 attctcacttactcgtccattttttactctgttgaccagacaatcaattcttaaaacctg 300

                                                                       
Query: 361 gtggacacagagtggtggtgttgatgccaatgtgaagaacagagctagaaattgttgtaa 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 299 gtggacacagagtggtggtgttgatgccaatgtgaagaacagagctagaaattgttttaa 240

                                                  
Query: 421 gtgggaaaagcagcccccgcttttgtagtgacagatgca 459
           ||||||||||||| |||||||||||||||||||||||||
Sbjct: 239 gtgggaaaagcagtccccgcttttgtagtgacagatgca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space:   383801
Effective search space used:   383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)