Query= MSMg01no422_l07.b1 MSMg01no422_l07.b1 CHROMAT_FILE:
MSMg01no422_l07.b1 PHD_FILE: MSMg01no422_l07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:13 2005
(491 letters)
>mm_chr12_39570523_39571414
Length = 892
Score = 893 bits (462), Expect = 0.0
Identities = 484/492 (98%), Gaps = 3/492 (0%)
Strand = Plus / Plus
Query: 1 atctcagccccactgtgtttgtctaacttggattttgcaggcaggaaagggggaagggag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atctcagccccactgtgtttgtctaacttggattttgcaggcaggaaagggggaagggag 260
Query: 61 g-atgacatgctccttagctgggctagtttggaaaggggaacttgacagggtggagtaca 119
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 ggatgacatgctccttagctgggctagtttagaaaggggaacttgacagggtggagtaca 320
Query: 120 cttttgtagtgtgtaatttatgctttcttttcaaacagaacaaccaggacacttaggctt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttttgtagtgtgtaatttatgctttcttttcaaacagaacaaccaggacacttaggctt 380
Query: 180 tgcgttgcttacgaccagtggctgaaatgaacatcaactatttttataagtggagctgag 239
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 tgcgttgcttacgaccagtggctgaaatgaacatcaactgtttttataagtggagctgag 440
Query: 240 atttgaaatgaaatgaatcagtttaaagaccactgggtttgaatgtatgtgtttagtgaa 299
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttgaaatgaaatgaaacagtttaaagaccactgggtttgaatgtatgtgtttagtgaa 500
Query: 300 tgtgaacaaaagagccaaaagattaccttcctttcaaaacggggtgtgtgtgtgtgtgtg 359
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 501 tgtgaacaaaagagccaaaagattaccttcttttcaaaacgg--tgtgtgtgtgtgtgtg 558
Query: 360 tgtgtgtgtgtaaaatgcccacacctgtgcattcctgtgtctgtgtgcactcatttgagt 419
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tgtgtgtgtgtaaaatgaccacacctgtgcattcctgtgtctgtgtgcactcatttgagt 618
Query: 420 gtaggcttttggattttaaatattcttatgaaatgttttggagctcaattatttccatac 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gtaggcttttggattttaaatattcttatgaaatgttttggagctcaattatttccatac 678
Query: 480 tcaaatgattta 491
||||||||||||
Sbjct: 679 tcaaatgattta 690
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 892
Length adjustment: 10
Effective length of query: 481
Effective length of database: 882
Effective search space: 424242
Effective search space used: 424242
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no422_l07.g1 MSMg01no422_l07.g1 CHROMAT_FILE:
MSMg01no422_l07.g1 PHD_FILE: MSMg01no422_l07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:13 2005
(503 letters)
>mm_chr12_39704062_39704964
Length = 903
Score = 607 bits (314), Expect = e-178
Identities = 320/322 (99%)
Strand = Plus / Minus
Query: 182 aattggcaactaatgacttcttagggacagagagccagtttattttggacatggccctta 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 903 aattggcaactaatgacttcttagggacagagagccagtttattttggacatggccctta 844
Query: 242 gagtctgacaattatcctgtggataaccctacctatatgcgtgcacataactacaacact 301
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 gaggctgacaattatcctgtggataaccctacctatatgcgtgcacataactacaacact 784
Query: 302 aggtgaactcaatgaatttaataaagaatacatgaaatagaaaggagaaagttgagggct 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 aggtgaactcaatgaatttaataaagaatacatgaaatagaaaggagaaagttgagggct 724
Query: 362 tacaggaggagttggaaggaagagagcggaagaagcatttaaacaaaacaaaaagatgtg 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 723 tacaggaggagttggaaggaagagagcggaagaagcatttaaacaaaacaaaaagatttg 664
Query: 422 tctctgaaattttcaaaaaatattttttaaaagaaccctcacagatggatggtaacaagt 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 tctctgaaattttcaaaaaatattttttaaaagaaccctcacagatggatggtaacaagt 604
Query: 482 taagttactccagtctagtgta 503
||||||||||||||||||||||
Sbjct: 603 taagttactccagtctagtgta 582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space: 440249
Effective search space used: 440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
