BAC Information

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BAC

Clone NameMSMg01-423A19
Chromosome12 (Build37)
Map Location 46,614,741 - 46,614,919
singlet/doubletsinglet
Overlap genenone
Upstream geneNrcam, EG620025, Stxbp6
Downstream geneLOC664952
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423A19.T7 (MSMg01no423_a19.b1)MSMg01-423A19.TJ (MSMg01no423_a19.g1)
ACCAG517296AG517297
length769719
length of high quality
(start - end)
179 (122 - 300)93 (61 - 153)
definitionCHROMAT_FILE: MSMg01no423_a19.b1 PHD_FILE: MSMg01no423_a19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:38 2005CHROMAT_FILE: MSMg01no423_a19.g1 PHD_FILE: MSMg01no423_a19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCTATACGACTCACTATTCGAAGAGGATCCGCGGAANNCATTGCTTACA
TGCACCCGGGNNCNNNCATGTTGCTTAGTACAAGTACCATTCCCATGTGG
TTTGGCCTCTAAAAATGCGANACAGCCTCTGAGGAGCTACATCTTCATTT
ATACTCATTTTAGTTAATACTTCAATAGAAATATCCAGTGGCCACCAAAC
TGCCCATACAGTCTGCACTCTTGTCTAGTACTATTTTTTTAAGGTCCTCT
AGCATCATTGTCTTTGGATTTTAAGGCGAACACTTCTGAGGGTAGAATCA
TATTTTTTGGCAAATAGGTGCATCTTTGAACAGCAATGAATGTTATATGT
GGCCTCTGGGTTAAATATCAAAGAAAGACAAGATCAGCTATGGAGTGCCC
AACAGTGGAGGCATCCATGCAATTTTTTTAAACTAGAAAATAGTACTCTT
TCTGGACCCCAGTGTTCCTAAGTATAGTGCATCCTTGGAATTCTTTTCTG
CATTGCTCTCTTCACATTCATTGCATTTGAGGAAAACACCTGAGCAGCTA
ACAAAGCAGGATTTTGTCATTTCTTCTCCTGTTAATTTGCCAAATTCACT
CCCTTGTGTTTACTTTAAATTCCTACTATCTCCTTTCCCTTTTACTCTCA
CATCCTTTCCTTCCCCTATATAAAGTAATACTCGTATGTTGAAATCTCCA
TATTATCATGCACTTTTTATATTTCCGCATTTCTCTATCCTTCTTACAAC
CACTGCTTTTTACTCCCCN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCTAAGAAAGAAGGCTTCCATGTCACTTCCAGGTCAATTTC
TCCAAGTGCTGGTGAAGTGTGTGGTGTCATCAGAAATAGGGTCTTACTGT
AAGTGAAGGCTTTGTGAGACCACCAAGAACACCATGCCATCAGTAGAATA
ATGTTTCTTCGTGGAGATTAAACAGCAACGGCTTGGGCAACAATGTTCTA
AGANNNNATCAAACTTTCCTTCATAGAGATCAAGGCTTTAGGGTGATGGG
CTAATTTTTTGAATAAAAAACCTTATTTTATATTGCCCCCCCCCGGGGGG
GTNNNTTTCTTGGGTCCCCCCCTTTTTTAACCCCCCCAAAATAACTTTTT
TTTTGTTCGAAAAAAAGCCCCCCCTTTTGTGTGGGTTTAATAAAAAACAA
CATCTTCTTCCCTATTTTTTGGGGGGTGTGTTCCTCCCCCAACCAAAACA
AAAACCCTTTTCCTTCTTATAAGGAGGGAGACTTCTGGGTTGGCGTCCTT
TTCTTCCCCCCCCCTTTTCCTCTTTTACCCCCCCCCTCTCTTTTTTTTTT
ACTTAACATCTCCCTTTTATTCCCCCTCCCTCCCCCTCTTTTCCCTTTCC
CCTTTCCCCCTCCTTTTCCTCTTTTCCCCCCCCCGTCCCTCCCCTCTCCA
ATTCCTTCCCCTTTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_a19.b1 MSMg01no423_a19.b1 CHROMAT_FILE:
MSMg01no423_a19.b1 PHD_FILE: MSMg01no423_a19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:38 2005
         (179 letters)



>mm_chr12_46614541_46615119
          Length = 579

 Score =  308 bits (159), Expect = 2e-88
 Identities = 174/179 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagcctctgaggagctacatcttcatttatactcattttagttaatacttcaatagaaa 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagactctgaggagctacatcttcatttatactcattttagttaatacttcaatagaaa 260

                                                                       
Query: 61  tatccagtggccaccaaactgcccatacagtctgcactcttgtctagtactattttttta 120
           ||||||||||||||||||||||||||| |||||||||||||||||||||||||   ||||
Sbjct: 261 tatccagtggccaccaaactgcccatagagtctgcactcttgtctagtactataaattta 320

                                                                      
Query: 121 aggtcctctagcatcattgtctttggattttaaggcgaacacttctgagggtagaatca 179
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggtcctctagcatcattgtctttggattttaaggcgaacacttctgagggtagaatca 379


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 179
Length of database: 579
Length adjustment: 8
Effective length of query: 171
Effective length of database: 571
Effective search space:    97641
Effective search space used:    97641
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)