BAC Information

Click to search

BAC

Clone NameMSMg01-423E11
Chromosome12 (Build37)
Map Location 117,594,186 - 117,594,429
singlet/doubletsinglet
Overlap geneD12Ertd551e
Upstream geneIgh, Ighv1-61, Ighv1-62, EG668544, EG238448, EG668549, EG432709, EG668552, Ighv1-63, Ighv1-64, Ighv8-10, Ighv1-65, EG668554, EG636462, LOC217924, Ighv1-66, EG435328, Ighv1-68, LOC435329, EG668563, Ighv1-69, Ighv8-12, LOC619863, EG638634, EG619886, Ighv1-72, EG668575, EG668577, EG668582, Ighv1-75, Ighv1-77, Ighv1-78, GA_x5J8B7W27DS-1519-2216, Ighv1-79, LOC668586, Ighv1-80, Ighv1-81, Olfr241-ps1, Ighv1-83, EG434609, LOC668595, EG668597, EG668599, Zfp386, Vipr2, LOC676058, Wdr60, LOC100042963
Downstream geneD430020J02Rik, Ncapg2, Rnu7-ps1, Ptprn2, LOC627375, LOC432713
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423E11.T7 (MSMg01no423_e11.b1)MSMg01-423E11.TJ (MSMg01no423_e11.g1)
ACCAG517472AG517473
length735739
length of high quality
(start - end)
241 (60 - 300)243 (57 - 299)
definitionCHROMAT_FILE: MSMg01no423_e11.b1 PHD_FILE: MSMg01no423_e11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:55 2005CHROMAT_FILE: MSMg01no423_e11.g1 PHD_FILE: MSMg01no423_e11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGGCCGCTATACGACTCACAATCAAAAGAGGATCCGCGGAATTCTCAAAT
GCTGAAACTCAAATGGCTGAGAAGTACTTAAAGAAATGTCAACATCCTTA
GCCAACAGTGAAATGCAAATCAAGGCTACTTTGAGATTTTATCTTAACAC
CTATCAGAATGGCTGCAATCAATAACAAAGTGATGTCTCATTCTGGTGAG
GATTTTCATCCATTGCTGATGGGAATGCAAACTTGTGTATTCACTGTGGA
AATCAATGTGGTGATTCCTCAGGAAGATGAGAATGACTTTACCTCAAGAT
CTTAGCTGATTTCTCTTGGGCATATACCCAAAGGTCACTCCATCCTACTA
CAATGATACTTGCTCAACTGTGTTCAGTGATGCCTGATTAATTGTAGCCA
GAAATTTGAAACTACCTAGATGTCTCCCAGTGGAACAATGGATGAAGAAA
ATGACCTACATTTACACTATGAAGTATTGCCCAGCTCTTTAAAAAATAAC
ATTATAAAATTTGTAGGCTCTCCTGGGCATATATCCAGAAGATGCCCCAC
CTGGTAATAAGGACACATGCTTTCTCTATCGGCTTAGTTACCTTATTTAT
TTTGTTTTAATCTGGTTCTTATTCCGATGCCCCTCTTTTTTTTTATGGTC
TCCTACACCGTGGCTCTTCTACCCTCGCATTACCTATCCACCTTTTAATA
TGACTACTCTATATCTTCCCATGTATACGGCCGCG
AGGCCTGGGGGNCGGCCTTTCAAAGAAGTTAGGNGACCTATAGATTACAC
AAAGGAATTCCTAACCCTGAGCTGAACCAAGTCCTCTGGGAGTAGGGATG
CCCCCTCACTTCTCCTCCTGGCTAGCTGAGAAACTCTGACTTACAAGGAG
GGCATGCAGGCCTTGCCTATACTAAGTATGAGGTTCAAGCTACTAAGGAG
AACTTGCATAGTTCTAGAGTATAAAATCACACTTATTTAAGCCATCTCTC
TTGGGTCTTTGATACATGAATTTATTTCAAACAAACATTAAGACTGTATT
TGTGATTTTGGGCCCATTCAGTTTTAATGAATCTACAATTTTACGGCGCA
CCTCCTTCTAATATTTTTAAAAATAACCGAAGTTTATAATTGACAACATT
AAAAACCAGCCTCTGAACAATTTGCCGTTGTCACTGCCTTAATCAATTTA
TTATGCCTACCTTTGTGTGAATGCTACTCTAACATCTATTCTAATCTAAA
CTTGCAGTATATAGAAAATAACCCACAGTTTAGCTTGCACTTTTATAATT
CTTTTAATGGTTTACAGCACAAGGGGGCGCATCTTAATCCCAGACGACCC
CGTACATTTACTAGGCTCTTCACCACTGAGTTTTCTTTCTTTGACCGAAT
ATTCCCGTTCCCCCTTTCATATGCCCTTTCCCCCTTATACCGTTCACCAA
AAACATGCCTTTTACTTCCCATTGTCCCCTTTTCTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_e11.g1 MSMg01no423_e11.g1 CHROMAT_FILE:
MSMg01no423_e11.g1 PHD_FILE: MSMg01no423_e11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:55 2005
         (243 letters)



>mm_chr12_117593986_117594629
          Length = 644

 Score =  456 bits (236), Expect = e-133
 Identities = 242/244 (99%), Gaps = 1/244 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcctaaccctgagctgaac-caagtcctctgggagtagggatgccccctcacttctcc 59
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 444 attcctaaccctgagctgaacacaagtcctctgggagtagggatgccccctcacttctcc 385

                                                                       
Query: 60  tcctggctagctgagaaactctgacttacaaggagggcatgcaggccttgcctatactaa 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcctggctagctgagaaactctgacttacaaggagggcatgcaggccttgcctatactaa 325

                                                                       
Query: 120 gtatgaggttcaagctactaaggagaacttgcatagttctagagtataaaatcacactta 179
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 324 gtatgaggttcaagctactaaggagaacttgcatagttctagagtataaaatcacactga 265

                                                                       
Query: 180 tttaagccatctctcttgggtctttgatacatgaatttatttcaaacaaacattaagact 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tttaagccatctctcttgggtctttgatacatgaatttatttcaaacaaacattaagact 205

               
Query: 240 gtat 243
           ||||
Sbjct: 204 gtat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 644
Length adjustment: 9
Effective length of query: 234
Effective length of database: 635
Effective search space:   148590
Effective search space used:   148590
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)