BAC Information

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BAC

Clone NameMSMg01-423M24
Chromosome12 (Build37)
Map Location 100,378,517 - 100,378,864
singlet/doubletsinglet
Overlap genenone
Upstream geneGalc, Gpr65, Kcnk10, Spata7, Ptpn21, Zc3h14, Eml5, LOC100039845, Ttc8, EG667779
Downstream geneChes1, LOC100039892, 2610021K21Rik, Tdp1, LOC100040041, Kcnk13, Psmc1, BC002230
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423M24.T7 (MSMg01no423_m24.b1)MSMg01-423M24.TJ (MSMg01no423_m24.g1)
ACCAG517881AG517882
length787900
length of high quality
(start - end)
449 (28 - 476)---
definitionCHROMAT_FILE: MSMg01no423_m24.b1 PHD_FILE: MSMg01no423_m24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:35 2005CHROMAT_FILE: MSMg01no423_m24.g1 PHD_FILE: MSMg01no423_m24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGCTATACGACTCACTATATTCAGAGGATCCGCGGAATTCCCATCATCTG
ATTGGCCTATAGGAATGTATACGGGACATTTTCTTGACTAATGATTGATG
TGGGAGGGCTGTAGCCCACTGGGGATGATGCCTGTTCCAGGCAGGTGGTC
CTGAGTTATGTAAGAAAGCCATGGGGAGCACCCAGTAAGGAGTGTTACTC
TGTGGTCTCCGATTCAGTTCCTGCTTCTGGGTACCTGCCTTAGTTTGAGT
TTCTGCCCTGACTCTAACCTCCCCAAGTTGTATCTGATCAATGGTTTTTT
CACAATAGCAGAGAAGCTAACCAGGACAGAGAGGAGCATAAGAGAGGGTA
CTGGGAGGCCAGTTCATGTATGAAATCATCAGCAAAGAAGAAAGGAAAAA
TCCTCAAGACTAGATAAAGACAGCCAGAGCCTCTTTTCCCGTCCCCTCTC
CTCACATCTCCAACATGGCTCCAGAGGCGGGAAGGTTCCAGATCAAAGTG
TCAGCCAACTAAATGAGAGCCATCTTGCTCGTAGGTGGAATCTCTTGGCT
GGGACTCCCTTGGGGAGGAAAGAACCATCCTCTCCCTTATGGCCTGTGTT
CTAAGGGAAGGGGTTTTTTTCCCAAAATTGTCCCGGCCATCCCCCGGTAT
TGGTTTTTTTTTCTCCCCTTGTTGTTCAAAACCTTTGTCTCTTTCGGGTT
TTGTTTTCCCGCCCTCCCTAAGTTTACCTCTGTTTATGTTTTGCCTTGTG
TACCCCTTTGGGTACCCCTTTTCCTATAATACCCCCT
CGCCTGAGTTTTTCAGACATGATGTAGATAGTAGAGTTACGAGGAGGAGA
GGTTTTCGCGCGGACCGTACTGNCAGNCGCGTTACGCATAGAGAGGGTCT
TACGTTCGTCTAAAAATATAAACTTGGTAAACCTTAGGCAATAAGGGGCC
GCTTTGCCTTACAATCCTTTAGTTACCTTAAGGGGGAAAAAAGGTAAAAA
TATTGGGGGTTTCCAGGGGTTAATCCGAGAACCTTTTGAAATGGAAACCC
TCTGGTTTTATAAAAGAAAACCCTCCCAAATAAACCCCCCCCCCTCCCCC
CCCCCCCCAAAAAAAAANNNNTNTNTTNTNTNTNTATAAATTGGAGAAGG
AGGAGAGGGGGGGGGGGGGGTTTTTTTATAAAANNTTTNNNNTAANTTTN
NNNNTCTTTTTTTTCTTTTNTTTTTTTNTTTTTCTTTTTTTTTTTCTNNT
TCCTCTCTTTTTNTTNNTTTTNTTTTTTTTTTTTTNTTTTTTCCTTCTTT
CCCCCCNTNCCCCCNCCCTTCCTCNTTCCCTTTTTTTTTCTCTTTTTTTT
CCTTTTTTTTTNCTTTTTTTTTTTTTTCTTCCTTTNTCNNTTTTTTNTTC
CTTTTTCTTTTTTTTTCTCTCCTTTTTTTTCTTTTCTTTCTCTTTCTCTC
TTCTTTCTCCTTTCCCTTCTTCCTCCTTTTTCTTTTTTCCTCTTTTTTTT
TTTCTTTTCCCTTCTTTTCTCTTTTTTTTTTTTTNCTCCTCTCTCTCTTT
TTCCCCCCCTCTTTTTCTTTTTTTTTTTTTTCTTTCCCCATTTTTTCTCT
TTCTTTCTCTCCCTCTCTTTCTCTCTCCTTTCCCTTCCTATTCTTCTCCC
CCCTCTTCTTCCCCTTTTCCTTTCCTCCCCTATTACTTCACACCTCACCG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_m24.b1 MSMg01no423_m24.b1 CHROMAT_FILE:
MSMg01no423_m24.b1 PHD_FILE: MSMg01no423_m24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:35 2005
         (449 letters)



>mm_chr12_100378016_100378864
          Length = 849

 Score =  629 bits (325), Expect = 0.0
 Identities = 343/349 (98%), Gaps = 1/349 (0%)
 Strand = Plus / Minus

                                                                       
Query: 101 atgcctgttccaggcaggtggtcctgagttatgtaagaaagccatggggagcacccagta 160
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 atgcc-gttccaggcaggtggtcctgagttatgtaagaaagccatggggagcacccagta 791

                                                                       
Query: 161 aggagtgttactctgtggtctccgattcagttcctgcttctgggtacctgccttagtttg 220
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 790 aggagtgttactctgtggtctccgcttcagttcctgcttctgggtacctgccttagtttg 731

                                                                       
Query: 221 agtttctgccctgactctaacctccccaagttgtatctgatcaatggttttttcacaata 280
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 agtttctgccctgactctaacctccccaagttgtatctgatcaatggttttttcacaata 671

                                                                       
Query: 281 gcagagaagctaaccaggacagagaggagcataagagagggtactgggaggccagttcat 340
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 gcagagaagctaaccaggacagagaggagcataagagagggtactgggaggccagttcat 611

                                                                       
Query: 341 gtatgaaatcatcagcaaagaagaaaggaaaaatcctcaagactagataaagacagccag 400
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 610 gtatgaaatcatcagcaaagaagaaaggaaaaatcctcaagactagataaagacaatcag 551

                                                            
Query: 401 agcctcttttcccgtcccctctcctcacatctccaacatggctccagag 449
           |||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 550 agcctcttttcccgtcccgtctcctcacttctccaacatggctccagag 502


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 849
Length adjustment: 10
Effective length of query: 439
Effective length of database: 839
Effective search space:   368321
Effective search space used:   368321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)