BAC Information

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BAC

Clone NameMSMg01-423O14
Chromosome12 (Build37)
Map Location 52,365,161 - 52,546,315
singlet/doubletdoublet
Overlap geneLOC100039525, 6030408C04Rik, Scfd1, LOC620390
Upstream genePrkcm, LOC100039517, LOC636070
Downstream geneLOC100039578, Coch, Strn3, Ap4s1, Hectd1, EG544864, LOC100039476, Heatr5a, LOC676784, 6530401N04Rik, Gpr33, LOC100039627, Nubpl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423O14.T7 (MSMg01no423_o14.b1)MSMg01-423O14.TJ (MSMg01no423_o14.g1)
ACCAG517956AG517957
length745742
length of high quality
(start - end)		504 (34 - 537)489 (65 - 553)
definitionCHROMAT_FILE: MSMg01no423_o14.b1 PHD_FILE: MSMg01no423_o14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:42 2005CHROMAT_FILE: MSMg01no423_o14.g1 PHD_FILE: MSMg01no423_o14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,545,815 - 52,546,315)(52,365,161 - 52,365,649)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCATATGT
ACCGTGCTCATATAGTCATACAGTCACATCTTCATAAATACTGGAATCAC
TGCAGGAATTCCATATGTACAATGCTCACTGCAATCCAAAGACTCCTTTT
TCTGCTATTTTGTCACACGTAAGCTTAAGAAAAGCAGAGTGATTCAAGTT
GCTGAGGGCTTTAAGGCTGTATCTTGGGTATGCAGAGTTGAATTTACCTG
AAGGCCATTCACTGGTCACAAGCTTTGCCTATGACAAACTATTCCTTGGG
ACTACTGTTACCTTTTTAGGAGCAGAGAAGTTTTTTGTTAAACTTACCTC
TTGGAATGGACTTTTGTTCCTAGGAACTGAGCTGCAATAAAGAGAAACTG
CACTGAAAATTTCATCCTTGGCTTCTTTTACGGGTAAGATGGGTATGGGG
ACACACGTTCATGTGCACTTGTGAGCAGCATTAAGAAGGTATTCCAGGTC
CACCTTCCTGGGAAGCAGGGGGTTCTTCAGTTTTGTAGAGGAAGGAGCTA
GAAGGTAGATATCTCAATGTCTTAAAGGGAAGGGGACAACCTACTAACAA
CTGACACAAACTCTAGATAGCCTCCGCGAGAAAGTGAGGAATAATGGGAA
CGGGTGCAAACTTGCCCCACGCAAAACAAAACCTCCTTTGCATCCTCTTC
TGGGGGGGAGGGGAATAGAAAGTCCAACTTACACCTTTGTTTCTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXATAAAATTGGGATTATTTGCTTTTAGAATAGATTTA
TATAGAGATTTGTGTCCGAATCACATGGAGAATTTCACCTGTGGTTCAGA
ACTAGGATAGAGAAAGTTAGTCAAAGTCCATGTAGAGAGAGCAGTGGTAA
TTACTTGCTATGACCAGGTATTAATTTTTAATGTCTGTGGCTCCAACTAG
AGAGCCCAACAGATAAATGGTATAACAGGATGGCTGCTCTAGGCACAGAG
TTTAACAAGTATTAACTACCTGCTTCTTATAGGCAGGTGCTGCCTGTATT
TTTATTAGTAAAAGTTTGTATTGTTTTAAAGATGGCATAAAGATATATTG
CTCTAATATGCCACAGGATACTCAAATTCTGTCTAACGTGGGCTACACTG
GAATTTGGGTTATTATCTTGCATGGCAAAATAGAAAAGGTCTAAGAATAG
CACATACAGTATTTTAGTTTATTTCATTTATTTTGGGNTATATTAATTTT
CAAAGTGGGTGTGATGTTGAGTTTTATGGTTATATTATTCCTCTGAGAGA
GAGGCCACAATAAATGATTTTCTGGGTACTTGTTCTAGGATATGTCTATT
TCGGGAAAAACGTTTTGTCTTTGTGGGTTTTAAAAAAGTAATATTGGTCT
TTTCGCCCTTTCCACGGTCTTTTATCCCTTTTTTTTTTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_o14.b1 MSMg01no423_o14.b1 CHROMAT_FILE:
MSMg01no423_o14.b1 PHD_FILE: MSMg01no423_o14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:42 2005
         (504 letters)



>mm_chr12_52545612_52546515
          Length = 904

 Score =  953 bits (493), Expect = 0.0
 Identities = 499/501 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccatatgtaccgtgctcatatagtcatacagtcacatcttcataaatactggaa 63
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 ggaattccatatgtacagtgctcatatagtcatacagtcacatcttcataaatactggaa 645

                                                                       
Query: 64  tcactgcaggaattccatatgtacaatgctcactgcaatccaaagactcctttttctgct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 tcactgcaggaattccatatgtacaatgctcactgcaatccaaagactcctttttctgct 585

                                                                       
Query: 124 attttgtcacacgtaagcttaagaaaagcagagtgattcaagttgctgagggctttaagg 183
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 attttgtcacgcgtaagcttaagaaaagcagagtgattcaagttgctgagggctttaagg 525

                                                                       
Query: 184 ctgtatcttgggtatgcagagttgaatttacctgaaggccattcactggtcacaagcttt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 ctgtatcttgggtatgcagagttgaatttacctgaaggccattcactggtcacaagcttt 465

                                                                       
Query: 244 gcctatgacaaactattccttgggactactgttacctttttaggagcagagaagtttttt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 gcctatgacaaactattccttgggactactgttacctttttaggagcagagaagtttttt 405

                                                                       
Query: 304 gttaaacttacctcttggaatggacttttgttcctaggaactgagctgcaataaagagaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 gttaaacttacctcttggaatggacttttgttcctaggaactgagctgcaataaagagaa 345

                                                                       
Query: 364 actgcactgaaaatttcatccttggcttcttttacgggtaagatgggtatggggacacac 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 actgcactgaaaatttcatccttggcttcttttacgggtaagatgggtatggggacacac 285

                                                                       
Query: 424 gttcatgtgcacttgtgagcagcattaagaaggtattccaggtccaccttcctgggaagc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 gttcatgtgcacttgtgagcagcattaagaaggtattccaggtccaccttcctgggaagc 225

                                
Query: 484 agggggttcttcagttttgta 504
           |||||||||||||||||||||
Sbjct: 224 agggggttcttcagttttgta 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space:   441636
Effective search space used:   441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no423_o14.g1 MSMg01no423_o14.g1 CHROMAT_FILE:
MSMg01no423_o14.g1 PHD_FILE: MSMg01no423_o14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:42 2005
         (489 letters)



>mm_chr12_52364961_52365849
          Length = 889

 Score =  870 bits (450), Expect = 0.0
 Identities = 479/489 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataaaattgggattatttgcttttagaatagatttatatagagatttgtgtccgaatcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataaaattgggattatttgcttttagaatagatttatatagagatttgtgtccgaatcac 260

                                                                       
Query: 61  atggagaatttcacctgtggttcagaactaggatagagaaagttagtcaaagtccatgta 120
           |||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||
Sbjct: 261 atggagaatttcacctgtggttcagaactaggatagggaaagttagtcagagtccaagta 320

                                                                       
Query: 121 gagagagcagtggtaattacttgctatgaccaggtattaatttttaatgtctgtggctcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 gagagagcagtggtaattacttgctatgaccaggtattaatttttaatgtctgtggctct 380

                                                                       
Query: 181 aactagagagcccaacagataaatggtataacaggatggctgctctaggcacagagttta 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagtagagagcccaacagataaatggtataacaggatggctgctctaggcacagagttta 440

                                                                       
Query: 241 acaagtattaactacctgcttcttataggcaggtgctgcctgtatttttattagtaaaag 300
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaagtaaaaactacctgcttcttataggcaggtgctgcctgtatttttattagtaaaag 500

                                                                       
Query: 301 tttgtattgttttaaagatggcataaagatatattgctctaatatgccacaggatactca 360
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 501 tttgtattgttttaaagatggcataaagatatgttgctctaatatgccacaggatactca 560

                                                                       
Query: 361 aattctgtctaacgtgggctacactggaatttgggttattatcttgcatggcaaaataga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aattctgtctaacgtgggctacactggaatttgggttattatcttgcatggcaaaataga 620

                                                                       
Query: 421 aaaggtctaagaatagcacatacagtattttagtttatttcatttattttgggntatatt 480
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 621 aaaggcctaagaatagcacatacagtattttagtttatttcatttattttgggttatatt 680

                    
Query: 481 aattttcaa 489
           |||||||||
Sbjct: 681 aattttcaa 689


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space:   421041
Effective search space used:   421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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