CCTTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACACATGCTGCAAAAGTATTTTGAATCCTTCCACCAATTCC
TCTGCATCCTTCTCTGTGTCAGTCAAATTATTGGTTCCCTCCATCTTGAA
GTTTCTTGGGATCTAAAGTGTTGCAGGGAGCAGTCTGCTTTTGCTTGATT
AAACAGGACAATCGAAGGCCGACATAATTATTTCTACAATAACTAGTGTG
CATTTATCCGACCTCTTAATGAATTTCCATATGAAATAATAGATGAAAAA
TTTGAGGATTTTTTATTCTTCTTACAATAATAACACATTCTTTATGAACC
TCTAGACCAAAGATCCCCACTTAATAACAAAACACCAGCATGTGATCAAA
CTTACTGGTGAAATCTCTCCCTAGTATAAAACCCTTTCTAACAGAGATCT
TCCTGTATCAACTCTAATACTAAAAGCAATGTAGTATGCAAGGAATTTCC
ATTCTTCTGTTGTGAATAAGAAACTGGAATTCAGGAAACTAGTGATTTAC
CTAACAAAGCTTGATGAGCCAAAGGTTTAACTAAACTCTCAGAATTTACT
CTGTGGCTGCTTTAATATATTAGCAGATGCTTCTTCTAGCCACCAAATAA
GTTACATAAAATGAATTAAAATGTTCTGGTAATTTAAAAACAATAATGTA
TATTTTTATTTCTCATGCTTATTACTAATA

NCCTTCGATGCTAGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAATAAAATTAATCAGAGT
AATTACGATTACAAGCAATAATTTGATTCAGAAAACTATATTTTTATATG
ATAAGACCAAGTAGTTCAGAATTAAGGTTTTGATGGGATTCTAAGCAAAC
TCCACCGAGGAGGAAGGGCATCAAGAAACGAGGAATGTGGCAGTCAGTGC
TGGAACAGATGTGCTGGAGGCTTTTAACTTGAGTTGAACATGAGGACAGA
AGGCTTTACTGTTCACTGGCAGCTTTATTAAAATGGTCACATGGTCACAT
GTTGTTGTGTGTTGAGAAAATTGTCAGGACAATGACCATGTTGACATGCT
TGGGAAACGGGTTCTAGGACAGAGAACGCGTATGGGGACCAGATGTGTTT
CACCTCATATCTAAGCCCCATGTCTATTAGCCGTGTGACTAACACTTTTC
CCTGGGCTTCCTAGGTGTTCTTCTCTCTTCGCTGATATAATTGATCATAA
ATATTCATACATATCTATTTTTTCTCTGACATTAATGAAGTGATATCATG
TACTTGATTGCATACCTATAATGTTGGTCCAACACTATGCAGCTTTATAT
TTTTTGTGCTGATCTTAGTGTGCCTCTGATTATATACTCACCTCTCCATA
TGACTTGGCCACTCAAAGAAACCAGATCGTTTCTTGTCTG

Query= MSMg01no424_m08.b1 MSMg01no424_m08.b1 CHROMAT_FILE:
MSMg01no424_m08.b1 PHD_FILE: MSMg01no424_m08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:48 2005
         (590 letters)



>mm_chr12_10412312_10413301
          Length = 990

 Score = 1087 bits (562), Expect = 0.0
 Identities = 580/586 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacacatgctgcaaaagtattttgaatccttccaccaattcctctgcatccttct 64
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacacaagctgcaaaagtattttgaatccttccaccaattcctctgcatccttct 264

                                                                       
Query: 65  ctgtgtcagtcaaattattggttccctccatcttgaagtttcttgggatctaaagtgttg 124
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 265 ctgtgtcagtcaaattattggttccctccatcttgtagtttcttgggatctaaagtgttg 324

                                                                       
Query: 125 cagggagcagtctgcttttgcttgattaaacaggacaatcgaaggccgacataattattt 184
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 325 cagggagcagtctgcttttgcttgattaaacaggacgatcgaaggccgacataattattt 384

                                                                       
Query: 185 ctacaataactagtgtgcatttatccgacctcttaatgaatttccatatgaaataataga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctacaataactagtgtgcatttatccgacctcttaatgaatttccatatgaaataataga 444

                                                                       
Query: 245 tgaaaaatttgaggattttttattcttcttacaataataacacattctttatgaacctct 304
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 445 tgaaaaatttgaggattttttattcttcttacaataataacacattctttgtgaacctct 504

                                                                       
Query: 305 agaccaaagatccccacttaataacaaaacaccagcatgtgatcaaacttactggtgaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 505 agaccaaagatccccacttaataacaaaacaccagcatgtgatcaaactcactggtgaaa 564

                                                                       
Query: 365 tctctccctagtataaaaccctttctaacagagatcttcctgtatcaactctaatactaa 424
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tctctccctaatataaaaccctttctaacagagatcttcctgtatcaactctaatactaa 624

                                                                       
Query: 425 aagcaatgtagtatgcaaggaatttccattcttctgttgtgaataagaaactggaattca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aagcaatgtagtatgcaaggaatttccattcttctgttgtgaataagaaactggaattca 684

                                                                       
Query: 485 ggaaactagtgatttacctaacaaagcttgatgagccaaaggtttaactaaactctcaga 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ggaaactagtgatttacctaacaaagcttgatgagccaaaggtttaactaaactctcaga 744

                                                         
Query: 545 atttactctgtggctgctttaatatattagcagatgcttcttctag 590
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 atttactctgtggctgctttaatatattagcagatgcttcttctag 790


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space:   568400
Effective search space used:   568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no424_m08.g1 MSMg01no424_m08.g1 CHROMAT_FILE:
MSMg01no424_m08.g1 PHD_FILE: MSMg01no424_m08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:48 2005
         (244 letters)



>mm_chr12_10576947_10577590
          Length = 644

 Score =  470 bits (243), Expect = e-137
 Identities = 243/243 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaataaaattaatcagagtaattacgattacaagcaataatttgattcagaaaactata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aaaataaaattaatcagagtaattacgattacaagcaataatttgattcagaaaactata 384

                                                                       
Query: 61  tttttatatgataagaccaagtagttcagaattaaggttttgatgggattctaagcaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tttttatatgataagaccaagtagttcagaattaaggttttgatgggattctaagcaaac 324

                                                                       
Query: 121 tccaccgaggaggaagggcatcaagaaacgaggaatgtggcagtcagtgctggaacagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tccaccgaggaggaagggcatcaagaaacgaggaatgtggcagtcagtgctggaacagat 264

                                                                       
Query: 181 gtgctggaggcttttaacttgagttgaacatgaggacagaaggctttactgttcactggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gtgctggaggcttttaacttgagttgaacatgaggacagaaggctttactgttcactggc 204

              
Query: 241 agc 243
           |||
Sbjct: 203 agc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)