Query= MSMg01no424_m23.b1 MSMg01no424_m23.b1 CHROMAT_FILE:
MSMg01no424_m23.b1 PHD_FILE: MSMg01no424_m23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:51 2005
(520 letters)
>mm_chr12_8173789_8174708
Length = 920
Score = 932 bits (482), Expect = 0.0
Identities = 510/520 (98%), Gaps = 2/520 (0%)
Strand = Plus / Plus
Query: 1 tgattcttattgctatgctttgggtgttaagtagctttaaaaaccaaatcaaacaaacaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgattcttattgctatgctttgggtgttaagtagctttaaaaaccaaatcaaacaaacaa 260
Query: 61 aacacacaagctgaaggctttgtccacaactagtggttccagtcactgaacatgactagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacacacaagctgaaggctttgtccacaactagtggttccagtcactgaacatgactagt 320
Query: 121 ccttaataggctagtccttaatttcctacttctctaaggtctgtcatatgatcctgggcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccttaataggctagtccttaatttcctacttctctaaggtctgtcatatgatcctgggcc 380
Query: 181 agaaggctgaagacatcctccatcttcctgacttacttgggctgtataagtaggcagctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaaggctgaagacatcctccatcttcctgacttacttgggctgtataagtaggcagctg 440
Query: 241 tttttattttttgtctcagttcctgaagtggtgttaggcttcctatatattttcaggtaa 300
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttttacagtttatctcagttcctgaagtggtgttaggcttcctatatattttcaggtaa 500
Query: 301 tgttgatcattctcagatttctgacagggttgaaaagttatttatagtctcatagccaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgttgatcattctcagatttctgacagggttgaaaagttatttatagtctcatagccaac 560
Query: 361 tcaggtgatttgctttgagagaacagatttgagaggatgttttcagatggcatacaattt 420
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcaggtgatttgctttgggagaacagatttgagaggatgttttcagatggcatacaattt 620
Query: 421 aaataaatccaggacataagccaggcatagaattataagccttttagttagggcaaatga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 621 aaataaatccaggacataagccaggcatagaattataagccttttagttagggcagatgg 680
Query: 481 tactgttctatcttaataacaaaaaaaaaatggactgggt 520
||||||||||||||||| |||||||||| ||||||||||
Sbjct: 681 tactgttctatcttaatgacaaaaaaaa--tggactgggt 718
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space: 464100
Effective search space used: 464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no424_m23.g1 MSMg01no424_m23.g1 CHROMAT_FILE:
MSMg01no424_m23.g1 PHD_FILE: MSMg01no424_m23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:51 2005
(479 letters)
>mm_chr12_8372442_8373320
Length = 879
Score = 775 bits (401), Expect = 0.0
Identities = 453/479 (94%), Gaps = 14/479 (2%)
Strand = Plus / Minus
Query: 1 ccctggactttctatgactctactctggccagagggctgggtcaggagcaggctgtgtct 60
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 552 ccctggactttctatgactctactctggccagagggctgggccgggagcaggctgtgtct 493
Query: 61 gcaggtagcttaatgcctagtgccaggcccagtctgggagcagtgcagtgacctagccag 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 492 gcaggtagcttaatgcctagtgccaggcccagcctgggagcagtgcagtgacctagccag 433
Query: 121 gaagttaatcggctctgagtcgtgggtggggtgccaggggagcctccctctatggccttt 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 432 gaagttaatcggctctgagtcgtgggtggggtgccaggggaacctccctctatggccttt 373
Query: 181 aaagtcagcattaatatcatctggattcatttctctgatcatggtgctctttaacttctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 aaagtcagcattaatatcatctggattcatttctctgatcatggtgctctttaacttctc 313
Query: 241 cttggaaacgtgtgaatgctcctctgaatttttctctggtggaggagacagagggaccag 300
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 cttggaaatatgggaatgctcctctgaatttttctctggtggaggagacagagggaccag 253
Query: 301 gatgcaagagtcagatgctaggaaacaggaagggagacagtggcgagaatggcacggctg 360
||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 252 gatgcaagagtcagatgctaggaaacaggaaaggagacagtggcgagaatgg-------- 201
Query: 361 gtatggaaccatatattgagtctagagccaaaagtctcaccactctcccagggcaagttt 420
||||||||||||||||| |||||||||| ||||||| |||||||||||||||||
Sbjct: 200 ------aaccatatattgagtctggagccaaaagactcaccaatctcccagggcaagttt 147
Query: 421 ctaagacttgctaaggagactgctacacccagtgaagctttctctgttcatctggccaa 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 146 ctaagacttgctaaggagactgctacacccagtgaagctttctctgttcatctgtccaa 88
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space: 407561
Effective search space used: 407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
