Query= MSMg01no424_n16.b1 MSMg01no424_n16.b1 CHROMAT_FILE:
MSMg01no424_n16.b1 PHD_FILE: MSMg01no424_n16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:54 2005
(498 letters)
>mm_chr12_57109169_57110066
Length = 898
Score = 905 bits (468), Expect = 0.0
Identities = 489/498 (98%), Gaps = 7/498 (1%)
Strand = Plus / Minus
Query: 5 gaattcatctttccca---caaagtactaggaaatcaccactttttaattctttttctgc 61
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 gaattcatcttt--tagatcaaagtactaggaaatcaccactttttaattctttttctgc 763
Query: 62 ttattaacttcataccccgctcactgcgccccctcctgattaccatccttcccccatctc 121
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 762 ttattaacttcataccccgctcactgcgccccctcctgattaccattcttcccccatctc 703
Query: 122 tcctaaccatagtggatagtaacctcccctccctcccacggaataaatttcatgagtatg 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 tcctaaccatagtggatagtaacctcccctccctcccacggaataaatttcatgagtatg 643
Query: 182 cttaggaataatggtcttaatgtttattctttggagggaaattccagtctgtcatatgat 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 cttaggaataatggtcttaatgtttattctttggagggaaattccagtctgtcatatgat 583
Query: 242 tgttaattcaggcccaattttcctaaggctatttaacaataataatagaaaatgcttcat 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 tgttaattcaggcccaattttcctaaggctatttaacaataataatagaaaatgcttcat 523
Query: 302 attttgaaatgaaaatccttcctgcggaaaaaaaatacttcaatttccttttaaatttaa 361
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 522 attttgaaatgaaaatccttcctgcgg-aaaaaaatacttcaatttccttttaaatttaa 464
Query: 362 gagaaagaacaatatctgtgttttaaaaaatgaaaat-aaaaaacctatagattctagtt 420
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 463 gagaaagaacaatatctgtgttttaaaaaatgaaaataaaaaaacctatagattctagtt 404
Query: 421 tgccaaagagtaacacagaatccacattacaggcctgagttacaccagcaaatatcagta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 tgccaaagagtaacacagaatccacattacaggcctgagttacaccagcaaatatcagta 344
Query: 481 tttagaataatttggggc 498
||||||||||||||||||
Sbjct: 343 tttagaataatttggggc 326
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space: 433344
Effective search space used: 433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no424_n16.g1 MSMg01no424_n16.g1 CHROMAT_FILE:
MSMg01no424_n16.g1 PHD_FILE: MSMg01no424_n16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:54 2005
(432 letters)
>mm_chr12_56934349_56935180
Length = 832
Score = 704 bits (364), Expect = 0.0
Identities = 417/442 (94%), Gaps = 13/442 (2%)
Strand = Plus / Plus
Query: 1 tctgtccatttccttagcactgtgatcccatgtaagctgttgtgctggcctggtctttac 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 tctgtccatttccttagcactgtgatcccatgtaggctgttgtgctggcctggtctttac 260
Query: 61 atggattctggtgtgaggactccagtcgtcatacttttgcagcaagactttacctgctga 120
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 atgaattctggtgtgaggactccagttgtcatacttttgcagcaagactttacctgctga 320
Query: 121 gttatcttatgagcctatgacaagagtctgagactttgaaaggaatttaaagttaagatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttatcttatgagcctatgacaagagtctgagactttgaaaggaatttaaagttaagatc 380
Query: 181 atagaaacttcttattttataactgacctgcgattcttcggggttttttt---------- 230
|||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 381 atagaaacttcttattttataactgaccagcgattcttcg---ttttttttttttttttt 437
Query: 231 gggggggggggttcgatatttggtttctctgtgtagccctggctgtcctggaactcactc 290
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gggggggggggttcgagacagggtttctctgtgtagccctggctgtcctggaactcactc 497
Query: 291 tgtagaccaggctagcctcgaattcagaaatctgcctgcctcaagccttccaagtactgg 350
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 498 tgtagaccaggctagccttgaactcagaaatctgcctgcctcaagccttccaagtactgg 557
Query: 351 aattaaaggcatgagccaccacgcccggcaagattctatgttttgccgagtttactgctg 410
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 558 gattaaaggcatgagccaccacgcccggcgagattctatgttttgccgagtttactgctg 617
Query: 411 ggttattaagagaagcgtggct 432
||||||||||||||||||||||
Sbjct: 618 ggttattaagagaagcgtggct 639
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 832
Length adjustment: 9
Effective length of query: 423
Effective length of database: 823
Effective search space: 348129
Effective search space used: 348129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
