BAC Information

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BAC

Clone NameMSMg01-425E02
Chromosome12 (Build37)
Map Location 45,681,887 - 45,682,129
singlet/doubletsinglet
Overlap geneNrcam
Upstream geneLOC100039059, ENSMUSG00000066507, LOC100039081, LOC664854, Dnajb9, LOC100039062, Pnpla8
Downstream geneEG620025, Stxbp6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-425E02.T7 (MSMg01no425_e02.b1)MSMg01-425E02.TJ (MSMg01no425_e02.g1)
ACCAG518981AG518982
length721765
length of high quality
(start - end)
573 (31 - 603)246 (79 - 324)
definitionCHROMAT_FILE: MSMg01no425_e02.b1 PHD_FILE: MSMg01no425_e02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:25 2005CHROMAT_FILE: MSMg01no425_e02.g1 PHD_FILE: MSMg01no425_e02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAAT
TCAATTCAATACTTAATGCAGCCAGCATCTAACCACTAGCTGAATGGATT
AAGAAAAAGAAATCTATCTGCTGTCTACAAAGAAGTTTATCATTCCTATA
AAGCTAGACACTATCTTAAAGTGAAAGGACAGAAGTGTCACCATCCTTAT
ATCTGAAGGCTTCCAACCAAAACTAATCTGAAGACACAAAGAAAACTTTA
TAGTAATAAAGGGATCATTGGAGCAAGATAATATTATAATACTAGGCATT
TATGCACCAAGCTCTGTTGCACCTAGTTTCATAAAAAGCATTCTAATGGA
ATGAAAGACACAAATTAACACAAACTCAACAATCATAGGTAATTTCAACA
TGCCACTTTCTCTAATAGATAGGTCAACTGGACAAGAAATAAATAGGACT
TTCAGAATTAGATGGCATCTGACATTAAATGGACATAATAGATATCTATC
AAGTATTTCTCATAAACATTAAAGAACACATATTCTATTCAGCAGTATAT
GGGAGCTTCTCTAAAGTATATCGTATACTGGGGCACAAAACAACTCTTTA
CAAATACAGAAAGATTGAATAATTCTGCATATCCAATTCAAACCACTATG
GCATAAACTTAACATCAAACAAACTCTAGTAAGTACATATGCAGATGGTA
ATTAAACTAATTTATTACTGA
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGGTCAAAAGCACAAGCAAAG
GCCAGGAATGGAAAGCTTGCAATGTACTGTGTGAAGAAAAGATGCCCTTG
GGTTGTGACTAGAGCCAGTTGGAGGTCAAAGGTGAATAGCTCTTATTAGC
CACAAGCATCTGTAGCCAGAGGCGAGTCCTTGAGTTTGAAGAGGGAAGTT
TTGTAGTTTAGGAATGTAGTATGTAGTTTACTGTTAACATTAGTGGATGT
TTACAGAGAGAGGTAGGCAGGTAGACCCTGGGGGAAGCCAAGGTCAGAGA
CCTCATTGGGAGCCCCTTGCTGATTAGCTGGGATGCTAGGCGCTCACTGA
TTCTGAATGTGCATTATGGCCCCCCTATATTATAGATTATAATTCCCCTT
TGCACAACTGACCATACACTATATCCCGAATAAACCCGTAACGGTTATTT
TCCCTTGTTCTGCCCCCTTATTACACTTCTTTTTTCCCTTTTCCCTCTCA
TCCCCCGCGAATTGCCCCTCTTGTTTTTTTTTCCTACGGCCTTCCCTCCT
ATTTTACCTCTATTTCTTTTTCTCGAAACTTTCGTTTCTATCTTCCTCCT
CCCACTCTTTCTCTTCTTATCTTTCTTGCCCTATCTCTCTTTCATCGTTT
CCTTTACCCCCTTTCGCCTTTCTTCTCTCTCTCCCTTCCTTCCTCTTCCC
TTCGTTACCCCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no425_e02.g1 MSMg01no425_e02.g1 CHROMAT_FILE:
MSMg01no425_e02.g1 PHD_FILE: MSMg01no425_e02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:25 2005
         (246 letters)



>mm_chr12_45681687_45682332
          Length = 646

 Score =  455 bits (235), Expect = e-132
 Identities = 241/243 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttggtcaaaagcacaagcaaaggccaggaatggaaagcttgcaatgtactgtgtgaagaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 ttggtcaaaagcacaagcaaaggccaggaatggaaagcttgcaatgtactgtgtaaagaa 260

                                                                       
Query: 61  aagatgcccttgggttgtgactagagccagttggaggtcaaaggtgaatagctcttatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagatgcccttgggttgtgactagagccagttggaggtcaaaggtgaatagctcttatta 320

                                                                       
Query: 121 gccacaagcatctgtagccagaggcgagtccttgagtttgaagagggaagttttgtagtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccacaagcatctgtagccagaggcgagtccttgagtttgaagagggaagttttgtagtt 380

                                                                       
Query: 181 taggaatgtagtatgtagtttactgttaacattagtggatgtttacagagagaggtaggc 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 taggaatgtagtatgtagtttactgttaacattagtggatgtttacagagagaggtagac 440

              
Query: 241 agg 243
           |||
Sbjct: 441 agg 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)