BAC Information

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BAC

Clone NameMSMg01-425G18
Chromosome12 (Build37)
Map Location 60,639,595 - 60,774,780
singlet/doubletdoublet
Overlap geneLOC665644
Upstream geneLOC100040183, Sec23a, Sip1, Trappc6b, Pnn, EG544872, Mia2, Mgea6, Fbxo33, LOC665628, LOC238199, LOC665639
Downstream geneEG622488, LOC665665, Ppia-ps12_475.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-425G18.T7 (MSMg01no425_g18.b1)MSMg01-425G18.TJ (MSMg01no425_g18.g1)
ACCAG519108AG519109
length752701
length of high quality
(start - end)		632 (28 - 659)259 (66 - 324)
definitionCHROMAT_FILE: MSMg01no425_g18.b1 PHD_FILE: MSMg01no425_g18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:38 2005CHROMAT_FILE: MSMg01no425_g18.g1 PHD_FILE: MSMg01no425_g18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,774,156 - 60,774,780)(60,639,595 - 60,639,853)
sequence
CGCTATACGACTCACTATAGTTCGAGGATCCGCGGAATTCAAAATCTTCT
AGCATTATTTGGGGATATATAAGTACATAGTTTTTCCACATATATTCTCT
TTCCATATACACATATATATGCCCCTATACTCTATTATATTTATATGTAC
ATATGCCATTTTTATTCTTCATATAAAATATACATATAATGGTTTTGCTC
TAGCATAGCTGTTCAAAATATTTTCAAAGCATTATTCAAACACCTCGTGG
CTGACATTTATAAGTGACATAAGCTTGACATATTGAAATGTTACCAATGT
TATAAAAAAGTGAACTAAAGGGTTTTGAGCACGTGAGCAATTTTATCATG
TTCATTTAGATAATATTGATACGTTAAATAGCTTAATAATGCTAGCTCTA
TAAATGACCATTTAGCTCATCAACTCAGAGAAATATAATCTTTGATCAAA
GCTTGTATGCAATTTATGGCCTTACTCAATTTTTAAAATATACTCTTATT
GTAGAACAAATTATTTTTCAGTAAAAGAAGGAGAAATTTACTATCTAGGT
AAATTTTTATTCTTGCTAAGAAAATTTTAAGTAATGAATGCCCTGCAAAT
GCTGTCAGTCTTGATATGTACAGTCATGAATTGGGCAGTAAAACAAAATA
GCAAGGTCACTGAGGTCACATCTCCTTACAAGAAACTTATATTTCTCAAT
TTTCTTGCCATGTTTCTGATCCAGGCACTAGAAGGGACACTGAAAGNCCC
TA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTTCACTGAGCCATTTTGACTTTGATCTTGCCTAG
ACTAATTTCTGAAATTGAGAGAGCAAGGAAAACATAAGACACAATTGGCC
GTTTTGAGGGGAACCCGTTAAATATAGAATGATTTAACCAAAGACAGATT
ATCAGTACTAAAGCTGTTGAATTCAAAATTTCTGCTTTATACTTTATGTT
ATGGTATTTACCTTCTTCCATGGGGTTGTACTGCAAATATCCCAAGTTCA
AAATATATATATGTTTGTTGACTTANACTAAAATTTTACTTAAAATGAAC
AAGTGAGTAAACAGATGGGGTTATCATCTAAGGATTGTCAAGCTAGGAAC
TCCATCTGAAGCTATTTTTGCTAGGGATGGTCCCCCCGAATAAATGAAAG
CTTTTCCCAAAAAAAGCGGGGTTTCAAAAAAATTTTTTCCCAAAAGGCCT
TTTTAAAAAAAGGCGCGGCAAAATGGGGAAATTTGAGAAAGCGTTTTTAA
TTTCCCCCCCCCAAAAAATGGTGGGGCCCCCACAAAAAAAACCCCGGTTT
TTTTTCTGGGAGAAGGGGGGAACCCCCCCCCCTCTTCCAAAAAAAAAAAG
TTAATTTTTTTCCCTCCCCATAAAAAAAAAAAACATTTTGTTTTTTTTTT
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no425_g18.b1 MSMg01no425_g18.b1 CHROMAT_FILE:
MSMg01no425_g18.b1 PHD_FILE: MSMg01no425_g18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:38 2005
         (632 letters)



>mm_chr12_60773949_60774980
          Length = 1032

 Score = 1193 bits (617), Expect = 0.0
 Identities = 623/625 (99%)
 Strand = Plus / Minus

                                                                       
Query: 8   gaattcaaaatcttctagcattatttggggatatataagtacatagtttttccacatata 67
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 gaattcaaaatcttctagaattatttggggatatataagtacatagtttttccacatata 773

                                                                       
Query: 68  ttctctttccatatacacatatatatgcccctatactctattatatttatatgtacatat 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 ttctctttccatatacacatatatatgcccctatactctattatatttatatgtacatat 713

                                                                       
Query: 128 gccatttttattcttcatataaaatatacatataatggttttgctctagcatagctgttc 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 gccatttttattcttcatataaaatatacatataatggttttgctctagcatagctgttc 653

                                                                       
Query: 188 aaaatattttcaaagcattattcaaacacctcgtggctgacatttataagtgacataagc 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 aaaatattttcaaagcattattcaaacacctcgtggctgacatttataagtgacataagc 593

                                                                       
Query: 248 ttgacatattgaaatgttaccaatgttataaaaaagtgaactaaagggttttgagcacgt 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 ttgacatattgaaatgttaccaatgttataaaaaagtgaactaaagggttttgagcacgt 533

                                                                       
Query: 308 gagcaattttatcatgttcatttagataatattgatacgttaaatagcttaataatgcta 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 gagcaattttatcatgttcatttagataatattgatacgttaaatagcttaataatgcta 473

                                                                       
Query: 368 gctctataaatgaccatttagctcatcaactcagagaaatataatctttgatcaaagctt 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 gctctataaatgaccatttagctcatcaactcagagaaatataatctttgatcaaagctt 413

                                                                       
Query: 428 gtatgcaatttatggccttactcaatttttaaaatatactcttattgtagaacaaattat 487
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 412 gtatgcaatttatggccttactcaattttaaaaatatactcttattgtagaacaaattat 353

                                                                       
Query: 488 ttttcagtaaaagaaggagaaatttactatctaggtaaatttttattcttgctaagaaaa 547
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ttttcagtaaaagaaggagaaatttactatctaggtaaatttttattcttgctaagaaaa 293

                                                                       
Query: 548 ttttaagtaatgaatgccctgcaaatgctgtcagtcttgatatgtacagtcatgaattgg 607
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 ttttaagtaatgaatgccctgcaaatgctgtcagtcttgatatgtacagtcatgaattgg 233

                                    
Query: 608 gcagtaaaacaaaatagcaaggtca 632
           |||||||||||||||||||||||||
Sbjct: 232 gcagtaaaacaaaatagcaaggtca 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space:   635684
Effective search space used:   635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no425_g18.g1 MSMg01no425_g18.g1 CHROMAT_FILE:
MSMg01no425_g18.g1 PHD_FILE: MSMg01no425_g18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:38 2005
         (259 letters)



>mm_chr12_60639395_60640053
          Length = 659

 Score =  493 bits (255), Expect = e-144
 Identities = 258/259 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttcactgagccattttgactttgatcttgcctagactaatttctgaaattgagagagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttcactgagccattttgactttgatcttgcctagactaatttctgaaattgagagagca 260

                                                                       
Query: 61  aggaaaacataagacacaattggccgttttgaggggaacccgttaaatatagaatgattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggaaaacataagacacaattggccgttttgaggggaacccgttaaatatagaatgattt 320

                                                                       
Query: 121 aaccaaagacagattatcagtactaaagctgttgaattcaaaatttctgctttatacttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaccaaagacagattatcagtactaaagctgttgaattcaaaatttctgctttatacttt 380

                                                                       
Query: 181 atgttatggtatttaccttcttccatggggttgtactgcaaatatcccaagttcaaaata 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 atgttatggtatttaccttcttccatggggttgtactgcaaatatcccaagttcaatata 440

                              
Query: 241 tatatatgtttgttgactt 259
           |||||||||||||||||||
Sbjct: 441 tatatatgtttgttgactt 459


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 659
Length adjustment: 9
Effective length of query: 250
Effective length of database: 650
Effective search space:   162500
Effective search space used:   162500
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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