BAC Information

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BAC

Clone NameMSMg01-426D19
Chromosome12 (Build37)
Map Location 10,133,211 - 10,312,470
singlet/doubletdoublet
Overlap geneLOC382567
Upstream geneLOC633030, LOC100042238, Osr1
Downstream geneNt5c1b, Rdh14, LOC238074, LOC100042308, EG668435, Kcns3, LOC628276, Msgn1, 5830483C08Rik, Smc6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426D19.T7 (MSMg01no426_d19.b1)MSMg01-426D19.TJ (MSMg01no426_d19.g1)
ACCAG519726AG519727
length762772
length of high quality
(start - end)		450 (44 - 493)509 (73 - 581)
definitionCHROMAT_FILE: MSMg01no426_d19.b1 PHD_FILE: MSMg01no426_d19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:42 2005CHROMAT_FILE: MSMg01no426_d19.g1 PHD_FILE: MSMg01no426_d19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,312,099 - 10,312,470)(10,133,211 - 10,133,719)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTGGCATGTTCTGTAAACTCTTGGGTTCCCTTTTCTCTTCTACTCCT
AGGGCTGTAGGAAAGAGTGATTTCATATTATTCAGACTTCTAACTATCAA
TACTTTATTGTCTTCTTCTGGGCTTTGTAGTATACACGAATTGCATAAGG
TTTCAGAATAAAACAAAACAAACAAACAAATAAATAAATAAACAAAACCA
ACCAGTTCCTTTATACTAACTATTATACCATTTTAACAACAAAACCTTAT
GTTGAATGTGCTTTTTGGTATCTCTTTAGAGCAGTAGCTCTTAACTTTCC
TGATGCTGGGGTTCTTTATTACATTTCCTCATGTTGTTTTGACCTTCAAC
CATAGATTATTTTCTTTGCTACTTCATAATGGTAATTTTGCTACCATTAT
GCATTGTAATATATGGATATGATGTGGAGGTTTTATTTTCTTANTTGCTT
ATTGAACATAATGACCCCCAAAGGAGTAATACCCCCCAGGTTGAAAACTG
GTGCTCTAGAGGATACACTTCTATTTTCCCATTGGTCTCTATACCTGGCT
TTATCTACTTTTTGAATGGTATCCTTTTGATTAATGACATGTACCTCTTT
AAGTCTCTTCTTTCTTTTCTTTTTATTTTGAATAGTCGCTTCTTTTTTTT
ATTATTTTCTTCTTTCTCCACTCTTTCCTCCTCCTCCCCTCATCGTTTTT
TTTTTCTCGCTG

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAATACGGGAGCAAATGATTATCACAAC
AGGGTTGAGAGAAACTTACTCAGGATCTTATCAGTTTGTGTGAGCCCATT
TCAGTAACATTTATCTAAGGTCTAAAAATTCTGCAGCTAAAATTAAAAGA
TGACTTTTGGATCTTTACATTCGTTTTGCTCTAAGAAGTAGCCTGGGACT
TAAGACTGTTTCTCAAAGTCCATTTAACAAATGCATAGTTACTATATAGT
TCAGATACATGTTTAGGTTTTACTCAGAATTAATAACATTTTCTTTTTCT
CATAGAAGTTAATTATAATTTTAATTATTCAAGTTTTTCTTGTTTTTACT
GTGATGTCTCTTAAAACAAACAAAACTGAGTCATAATTTCTGCTAGTTAA
ATAAATGAATTCTGCTAAAGTTTAAATTATCATCAATCTTAGCCAAAGAA
CAATCTATTATATTAGCAGTCACTGAGTGATTAGTTATTTATTCTCTTAA
AGGGAACTAAAGGAGATTAATATTCTGGTAAGTTTGTCACTAATTACTGA
GGTGTGCCTAGCTTTCTTTCATCGTATAATGTGTGAGACATGAATTCCAT
TATAATTACAATTAGTGTTAATGCCTTTTTAAATATATTTTATGGAAAAG
GGCTTTATTTTAAGACCAAAAATTTTTTTTCCCCTTTTTAAAGGGTAAAT
TAATGGTGAGCAAAGAACCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_d19.b1 MSMg01no426_d19.b1 CHROMAT_FILE:
MSMg01no426_d19.b1 PHD_FILE: MSMg01no426_d19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:42 2005
         (450 letters)



>mm_chr12_10312099_10312948
          Length = 850

 Score =  712 bits (368), Expect = 0.0
 Identities = 371/372 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcctggcatgttctgtaaactcttgggttcccttttctcttctactcctagggct 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggaattcctggcatgatctgtaaactcttgggttcccttttctcttctactcctagggct 313

                                                                       
Query: 64  gtaggaaagagtgatttcatattattcagacttctaactatcaatactttattgtcttct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gtaggaaagagtgatttcatattattcagacttctaactatcaatactttattgtcttct 253

                                                                       
Query: 124 tctgggctttgtagtatacacgaattgcataaggtttcagaataaaacaaaacaaacaaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tctgggctttgtagtatacacgaattgcataaggtttcagaataaaacaaaacaaacaaa 193

                                                                       
Query: 184 caaataaataaataaacaaaaccaaccagttcctttatactaactattataccattttaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 caaataaataaataaacaaaaccaaccagttcctttatactaactattataccattttaa 133

                                                                       
Query: 244 caacaaaaccttatgttgaatgtgctttttggtatctctttagagcagtagctcttaact 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 caacaaaaccttatgttgaatgtgctttttggtatctctttagagcagtagctcttaact 73

                                                                       
Query: 304 ttcctgatgctggggttctttattacatttcctcatgttgttttgaccttcaaccataga 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72  ttcctgatgctggggttctttattacatttcctcatgttgttttgaccttcaaccataga 13

                       
Query: 364 ttattttctttg 375
           ||||||||||||
Sbjct: 12  ttattttctttg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space:   369600
Effective search space used:   369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no426_d19.g1 MSMg01no426_d19.g1 CHROMAT_FILE:
MSMg01no426_d19.g1 PHD_FILE: MSMg01no426_d19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:42 2005
         (509 letters)



>mm_chr12_10133011_10133919
          Length = 909

 Score =  984 bits (509), Expect = 0.0
 Identities = 509/509 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   caatacgggagcaaatgattatcacaacagggttgagagaaacttactcaggatcttatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caatacgggagcaaatgattatcacaacagggttgagagaaacttactcaggatcttatc 260

                                                                       
Query: 61  agtttgtgtgagcccatttcagtaacatttatctaaggtctaaaaattctgcagctaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtttgtgtgagcccatttcagtaacatttatctaaggtctaaaaattctgcagctaaaa 320

                                                                       
Query: 121 ttaaaagatgacttttggatctttacattcgttttgctctaagaagtagcctgggactta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaaaagatgacttttggatctttacattcgttttgctctaagaagtagcctgggactta 380

                                                                       
Query: 181 agactgtttctcaaagtccatttaacaaatgcatagttactatatagttcagatacatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agactgtttctcaaagtccatttaacaaatgcatagttactatatagttcagatacatgt 440

                                                                       
Query: 241 ttaggttttactcagaattaataacattttctttttctcatagaagttaattataatttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaggttttactcagaattaataacattttctttttctcatagaagttaattataatttt 500

                                                                       
Query: 301 aattattcaagtttttcttgtttttactgtgatgtctcttaaaacaaacaaaactgagtc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aattattcaagtttttcttgtttttactgtgatgtctcttaaaacaaacaaaactgagtc 560

                                                                       
Query: 361 ataatttctgctagttaaataaatgaattctgctaaagtttaaattatcatcaatcttag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ataatttctgctagttaaataaatgaattctgctaaagtttaaattatcatcaatcttag 620

                                                                       
Query: 421 ccaaagaacaatctattatattagcagtcactgagtgattagttatttattctcttaaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccaaagaacaatctattatattagcagtcactgagtgattagttatttattctcttaaag 680

                                        
Query: 481 ggaactaaaggagattaatattctggtaa 509
           |||||||||||||||||||||||||||||
Sbjct: 681 ggaactaaaggagattaatattctggtaa 709


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space:   448601
Effective search space used:   448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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