BAC Information

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BAC

Clone NameMSMg01-426J17
Chromosome12 (Build37)
Map Location 40,305,827 - 40,306,235
singlet/doubletsinglet
Overlap genenone
Upstream geneDgkb, LOC668824, LOC100043142, Etv1, LOC100043145
Downstream geneLOC100043148, Arl4a, LOC100043606, Scin, Gm889, Ifrd1, EG629820, Zfp277, Dock4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426J17.T7 (MSMg01no426_j17.b1)MSMg01-426J17.TJ (MSMg01no426_j17.g1)
ACCAG520006AG520007
length780824
length of high quality
(start - end)
461 (48 - 508)251 (69 - 319)
definitionCHROMAT_FILE: MSMg01no426_j17.b1 PHD_FILE: MSMg01no426_j17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:12 2005CHROMAT_FILE: MSMg01no426_j17.g1 PHD_FILE: MSMg01no426_j17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATTCTGTTCCAAATGAAACTAGTAGTTGCCAAGCAAAGCAGGG
ACCCATATTTACATCCACCTTCCAAAAGTCCTTAACTAGGTAGTCAGGAA
GGTATTTGAGGCAAGAGTATTGTGAATTCCAGGTCAACTTAGGCTACAAA
GTGAGATCCTATCTCAAAGCAAACAAGCAATCCCACACACAAGAAAGGCA
AGACAAAACAAAACAAAAGCCAAGCAAAGACAAAAGAAGCACACTAAAGT
CTGCTTTCCTATGTAAGCTGAGCATTGCCCAAGCTGCTCCATTTAGAACA
TCCGCTCCAAGGTCTTAGGCTTAACATACCTAAAGATATGTCTGCCATCT
TTGCTTCCTGAGTAAGGACCCAGGGCTGAGCATGCTTGGGAATATTCCAA
TGTGCTGATCCCTTCAAGAAGTCGTATACTTTGTTCCTAGAGGACATTGC
TTGAGAAGTAACTTTTCTGCTGCCTGGGACTAACAGATCTTTCTTCAGCC
ATTTATCTCCTGGGCATAAATGTTCCTTTGTGGACTCCCATTAATGGGAA
CCTATGTCTGACCAGGAGCTGAAAAAAAAATTCTGAATGGCTTGGTAAAG
TTTAAAAAAATGCCCCCCCACGCCCTTTTAAAAAAACAAATTTTACCCCT
CCCCCCCGAACAACTGAAGTTTTTTTTGGGGGGCCCTCTCGCGGGAAAGG
GGCCCGGTCTTAAAAGTGGTTTTTATACAN
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCCGCGATTCTGTGCTAAAAACCACCTGGTCTTGGTTT
TTTTTTTTTTATTGTTTGTTTTGTTTAGATTTTCTAATGTGGTGGAATAC
AAGGTTTTAAGTACATTTTTATAATTCACTATATTGTCTCAGGGCCTGTT
GGTATGTCTGTGTTTTTAGTTTCTTCTTTTCTTAATTTAGATATTCTTTC
ACAGTCTTTTAGTTAGTTTGGTCAAGGGTGTGTCTATCTTGCTGATTTTC
ACAACCAAGTTTTTGTTTCATTTTTTTTTCGTATTGTTCTCTTTGTTTCT
ATTTTCTTGATTTCCGCCGCACTTTACTGTCATGTACTTTTTTGCGTGCG
CTTATTTATTTTCACTCCCCACCTACTATTTTTGCTGCTAGGTTGCTCAT
ATTACCTTTCTCCCTTCTTATTTCATTTTTCTATCTTCCCCAATACTATT
CTCCTCTCTCTTCTTTCCTTCTCTTTTTCTTCCTTCCACTCCCTTTTTAT
CTCCCTAATCTTCTTCTCCCCCTCTTCTATCTTCTCTATTTCCTTATCTC
TGTCTCTATATCTTCCTTACCATCTTTCTACCATCTATCTACTTTCCTCC
GCCTATTTTTTTTATCCCAATCTTCTTCATTTCTCTTACTATATTCTCTT
CTCTCCATCTCCATCTTTACTTATTCCACTCACTTCATTCCTCTAAGATC
CTTTTCCANCATCTTACCCCATCTCTTATTCCCTGTGTCTCCTATCCTCT
CCCTCTTCCATCTCCTTTCTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_j17.b1 MSMg01no426_j17.b1 CHROMAT_FILE:
MSMg01no426_j17.b1 PHD_FILE: MSMg01no426_j17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:12 2005
         (461 letters)



>mm_chr12_40305375_40306235
          Length = 861

 Score =  775 bits (401), Expect = 0.0
 Identities = 407/409 (99%), Gaps = 1/409 (0%)
 Strand = Plus / Minus

                                                                       
Query: 54  acccatatttacatccaccttccaaaagtccttaactaggtagtcaggaaggtatttgag 113
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 acccatatttacatccaccttccaaaagtccttaactaggtagtcaggaaggtatttgag 802

                                                                       
Query: 114 g-caagagtattgtgaattccaggtcaacttaggctacaaagtgagatcctatctcaaag 172
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gccaagagtattgtgaattccaggtcaacttaggctacaaagtgagatcctatctcaaag 742

                                                                       
Query: 173 caaacaagcaatcccacacacaagaaaggcaagacaaaacaaaacaaaagccaagcaaag 232
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 caaataagcaatcccacacacaagaaaggcaagacaaaacaaaacaaaagccaagcaaag 682

                                                                       
Query: 233 acaaaagaagcacactaaagtctgctttcctatgtaagctgagcattgcccaagctgctc 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acaaaagaagcacactaaagtctgctttcctatgtaagctgagcattgcccaagctgctc 622

                                                                       
Query: 293 catttagaacatccgctccaaggtcttaggcttaacatacctaaagatatgtctgccatc 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catttagaacatccgctccaaggtcttaggcttaacatacctaaagatatgtctgccatc 562

                                                                       
Query: 353 tttgcttcctgagtaaggacccagggctgagcatgcttgggaatattccaatgtgctgat 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttgcttcctgagtaaggacccagggctgagcatgcttgggaatattccaatgtgctgat 502

                                                            
Query: 413 cccttcaagaagtcgtatactttgttcctagaggacattgcttgagaag 461
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cccttcaagaagtcgtatactttgttcctagaggacattgcttgagaag 453


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space:   383801
Effective search space used:   383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)