BAC Information

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BAC

Clone NameMSMg01-426M02
Chromosome12 (Build37)
Map Location 64,383,762 - 64,384,262
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC622746, LOC100040438, 1700047L15Rik, Tspyl-ps, EG665741, EG382606
Downstream geneLOC435302
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426M02.T7 (MSMg01no426_m02.b1)MSMg01-426M02.TJ (MSMg01no426_m02.g1)
ACCAG520119AG520120
length778776
length of high quality
(start - end)
522 (40 - 561)501 (69 - 569)
definitionCHROMAT_FILE: MSMg01no426_m02.b1 PHD_FILE: MSMg01no426_m02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:24 2005CHROMAT_FILE: MSMg01no426_m02.g1 PHD_FILE: MSMg01no426_m02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CAACACATTACACTGAAGTGGCTGAGAACACTTAAATGTTCAAAATCCTA
AGCCATCAGAGAAATGCACATTAAAACTATTTTGAGATTCAATCTTACAT
TTTGCATCATCACTAAGATCAATAATACCAGTCCTGGCTCATGCTGGTGA
GATTGTGGAACAAGTGTAAAATTCCTTCATTGCTGGTGGGACAGTATACA
AGTACAGTCACTATGGAGATCCATATGGTGACTCCTCAGAAAAATGTCAA
ATGATCTACCTCAAGATCCAGCTACCCCACTCCTGGGGAATATACCCAAA
ATGTTCTTTGTCCTACCTGGAAGACTCTTGTTCATCCATTTTTATTGATG
CTATATGCATAATAGACAAAAATTGGAAACAAGCTTGGTGTCTTTCAACA
GAAGAATGAATAAGCAAAATGTGGTATGTTTAGACAATGGAAAATTTCTC
AGTTCTATAAAATAACAAAAATGATATCACAAAATTTTCAGACAAATGAA
TGAACCTAGGAAAATTATCAGGCTGAGTGAGGCAACACAGACATAGAGGA
TAAATATATGGATGCATTTGTTTATATGGGGATAATACATAATGAAAACT
AACCTATATCCGGAGACCTAGTAAACTGAGACCCCTTGACAGAGATCAGG
AAAATACTTGCATCCCCCTCGAGGGGGGGTAAAAAATAAATTTTTTTTTT
TTTCTTGTCTCCTTGCCTGGCTTTCCCT
AGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCCTCTGCCGGTCCTCTGTCCAGTGTCTAATC
TTGCCTTATAATTAATTAGCTGTCAGATCTGCTAAGCATCCATGAAGAGA
GGCACAGATGTCAGGCAAATTGTTCCTGAAATTAAGATCTGAACTGAGAG
TGTTTTTCATCCTGACCTTACAATTCTTCTTATTGATTTCGTTGTCATTT
TCACTTGTTGAGAGCAGAAAGAAGTGGGCGGAATGTACTTCTTTCTGAGA
CTGATTTGCCATGTAACATTTGAAGAAACATTTTCTTTTTATTTCAAAAT
ACTATTTGTAAATACACATAGATATTGTAAGTCCTCAAAACCTAGACACT
GAAATAATAATATGAATATGACAAGATAATATAGATAATTCATATTAAAA
TCTTTTAAAAGGATTATGATGATAAAGTGCCTGAAAAGATAAATGGAACA
AATGCTGTAGTAACATCTTTCACTGCCAACCTGTAAGTCCGTTTAACACG
CAATTTACCTTGTGCAGAATTTTTTAAAAATAATGTTTATATTTCTTTTA
AAATCTTTAGACATTTTTTGCATACCTGATATTAATCTGGGACATGGTTA
TTTTGCATTTGTAATTTTGTCTGCCAAATTATTGGATAATTTTCTAATAT
AGTTATGATATGATACCATAATATTTTAGTTTGGATTTTTTAAACTCCCC
CCGGAAGAATATGGTTATGGCCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_m02.g1 MSMg01no426_m02.g1 CHROMAT_FILE:
MSMg01no426_m02.g1 PHD_FILE: MSMg01no426_m02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:24 2005
         (501 letters)



>mm_chr12_64383562_64384462
          Length = 901

 Score =  946 bits (489), Expect = 0.0
 Identities = 498/501 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcctctgccggtcctctgtccagtgtctaatcttgccttataattaattagctgtcagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 tcctctgccggtcctctgtccagtgtctaatcttgccttataattaattagctgtcagat 642

                                                                       
Query: 61  ctgctaagcatccatgaagagaggcacagatgtcaggcaaattgttcctgaaattaagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 ctgctaagcatccatgaagagaggcacagatgtcaggcaaattgttcctgaaattaagat 582

                                                                       
Query: 121 ctgaactgagagtgtttttcatcctgaccttacaattcttcttattgatttcgttgtcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 ctgaactgagagtgtttttcatcctgaccttacaattcttcttattgatttcgttgtcat 522

                                                                       
Query: 181 tttcacttgttgagagcagaaagaagtgggcggaatgtacttctttctgagactgatttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 tttcacttgttgagagcagaaagaagtgggcggaatgtacttctttctgagactgatttg 462

                                                                       
Query: 241 ccatgtaacatttgaagaaacattttctttttatttcaaaatactatttgtaaatacaca 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 461 ccatgtaacatttgaagaaacattttctttttatttcaaaatactatttgtaaaaacaca 402

                                                                       
Query: 301 tagatattgtaagtcctcaaaacctagacactgaaataataatatgaatatgacaagata 360
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 401 tagatattgtaagtcctcaaaacctagagactgaaataataatatgaatatgacaagata 342

                                                                       
Query: 361 atatagataattcatattaaaatcttttaaaaggattatgatgataaagtgcctgaaaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 atatagataattcatattaaaatcttttaaaaggattatgatgataaagtgcctgaaaag 282

                                                                       
Query: 421 ataaatggaacaaatgctgtagtaacatctttcactgccaacctgtaagtccgtttaaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ataaatggaacaaatgctgtagtaacatctttcactgccaacctgtaagtccgtttaaca 222

                                
Query: 481 cgcaatttaccttgtgcagaa 501
           | |||||||||||||||||||
Sbjct: 221 cacaatttaccttgtgcagaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space:   437481
Effective search space used:   437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)