BAC Information

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BAC

Clone NameMSMg01-427A14
Chromosome12 (Build37)
Map Location 7,256,709 - 7,257,178
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC238049, LOC100042118
Downstream geneLOC668380, EG668388, Apob, 1110057K04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-427A14.T7 (MSMg01no427_a14.b1)MSMg01-427A14.TJ (MSMg01no427_a14.g1)
ACCAG520333AG520334
length731750
length of high quality
(start - end)
517 (54 - 570)476 (80 - 555)
definitionCHROMAT_FILE: MSMg01no427_a14.b1 PHD_FILE: MSMg01no427_a14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:47 2005CHROMAT_FILE: MSMg01no427_a14.g1 PHD_FILE: MSMg01no427_a14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTTTGATCTACTTAGACTTGAACTTTGTACAAGGAGAT
AAGAATGGATCAATACTCATTCTTCTACATGCTAACTGCCAGTTGTGCCA
GCACCATTTGTTGAAAATGCTGTCTTTTTTCCACTGGATGGTTTTAGCTC
CCTTGCCAAAGATCAAGAGACCATAGGTGTGTGGGTTCATTTCTGGGTCT
TCAATTCTATTCCATTGATCTAGTTGTCTGTTGTTGTACCACTACCATGC
ATACACAGGGCATCACCATGCAGTTTTTATCACAATTTCTCTGTAGTACA
GCTTGAGGTCAGGCATGGTGATGCCCTCAGAGGTTCTTTTATTGTTGAAA
ATAGTTTTTGCTATCCTAGGGTTTTTGTTATTCCAGATGAATTTGCAAAT
TGCCCTTTCTAACTCAGTGAAAAATTGATTTGGAATTTTGATTGGATTGC
CTTGAATCTGTAGATTGCTTTCTGCAGGATAGCAATTTTTACTATATTAA
TCCTGCCAATCCATGAGCATGGGAGATCTGCAGATGCTGGCAAGGATGTG
GAGAAAGAGAAACACTCCTCAATTGCTGGTGAAGATTGCAAGCTGGTACA
CCACTCTGGAAATCAGTCTAGCGGTTCCTCAGAAACTGGACATAGTACTA
CCGTTAGATCCAACATACTGCTCCCTGGCAA
NNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCCCCTTTCTTTATTCAGT
ACTGGGAATTGAATCTAGGATCTTTGGAATGCTAGGCAAGTGCTCTACCA
CTGAGCAAGCTTTATCCCCAGCCCTCTTTTCTACTTTTTACATTTTGAGA
CAATGTCTCAATAAACTGAGCAACTTGTCCAGGCAGAACTTAAACATGTT
GATCCTTCTGCCTTAGTTTCTTGAGTAGCCAGAATGATTATCGCCCCGAG
TCACCATTCCTTGTTTTGTGTTCATATTATAATTAATACATTGCAATGGC
ATTAAAAGGCATCATTTGGAAACAATATTTAACTTGCCTTTTTCATCTTA
GACATATCTACAGAAAGATTTGTCCATGCAATGATAGAGGACCTTCTGCT
GGGCTCCTAGGCACGGGTGACACCATGAACTTATTTCCTCCACATGCTTG
AAGTTGATACTTCTTTAATTATCATTTAAGAAAATTGTGTGTGTGGTGTG
GTGTGGTGTGNNTTNNNTNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNTNTNNNNNNNNTTNNTTNTTTTTTTTTNTTT
TTTTTTTTTTTNNNTNNNNNNTTTTTTTTTTTTTTTNNNNNNNNNNNTTN
TTTTTNTTTTTTNNTTTNTTTTTTTTNNNTTTNTTTTTTTTNTTTTTNTT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no427_a14.g1 MSMg01no427_a14.g1 CHROMAT_FILE:
MSMg01no427_a14.g1 PHD_FILE: MSMg01no427_a14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:47 2005
         (476 letters)



>mm_chr12_7256303_7257178
          Length = 876

 Score =  870 bits (450), Expect = 0.0
 Identities = 465/470 (98%)
 Strand = Plus / Minus

                                                                       
Query: 7   ctttctttattcagtactgggaattgaatctaggatctttggaatgctaggcaagtgctc 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 ctttctttattcagtactgggaattgaatctaggatctttggaatgctaggcaagtgctc 817

                                                                       
Query: 67  taccactgagcaagctttatccccagccctcttttctactttttacattttgagacaatg 126
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 taccactgagcaagttttatccccagccctcttttctactttttacattttgagacaatg 757

                                                                       
Query: 127 tctcaataaactgagcaacttgtccaggcagaacttaaacatgttgatccttctgcctta 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 tctcaataaactgagcaacttgtccaggcagaacttaaacatgttgatccttctgcctta 697

                                                                       
Query: 187 gtttcttgagtagccagaatgattatcgccccgagtcaccattccttgttttgtgttcat 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 gtttcttgagtagccagaatgattatcgccccgagtcaccattccttgttttgtgttcat 637

                                                                       
Query: 247 attataattaatacattgcaatggcattaaaaggcatcatttggaaacaatatttaactt 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 attataattaatacattgcaatggcattaaaaggcatcatttggaaacaatatttaactt 577

                                                                       
Query: 307 gcctttttcatcttagacatatctacagaaagatttgtccatgcaatgatagaggacctt 366
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 gcctttttcatcttaaacatatctacagaaagatttgtccatgcaatgatagaggacctt 517

                                                                       
Query: 367 ctgctgggctcctaggcacgggtgacaccatgaacttatttcctccacatgcttgaagtt 426
           ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 516 ctgctgggctccttggcacgggtgacaccattaacttatttcctccacatgcttgaagtt 457

                                                             
Query: 427 gatacttctttaattatcatttaagaaaattgtgtgtgtggtgtggtgtg 476
           ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 456 gatacttctttaattatcatttaagaaaactgtgtgtgtggtgtggtgtg 407


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space:   403556
Effective search space used:   403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)