Query= MSMg01no427_d19.b1 MSMg01no427_d19.b1 CHROMAT_FILE:
MSMg01no427_d19.b1 PHD_FILE: MSMg01no427_d19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:03 2005
(579 letters)
>mm_chr12_6047206_6048181
Length = 976
Score = 1073 bits (555), Expect = 0.0
Identities = 569/575 (98%), Gaps = 3/575 (0%)
Strand = Plus / Plus
Query: 5 gaattcctacccttattcacttagattgtaatgggaagaaagagacaaaatagtttgcat 64
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctacccttaataacttagattgtaatgggaagaaagagacaaaatagtttgcat 264
Query: 65 tatggatatcaactacatttctgaaagtgatttttgcattctagtatctttccatttgat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tatggatatcaactacatttctgaaagtgatttttgcattctagtatctttccatttgat 324
Query: 125 agtatctttcttgtaaggaggtttgacttacaccattgaggtactctgcacaaatgggaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agtatctttcttgtaaggaggtttgacttacaccattgaggtactctgcacaaatgggaa 384
Query: 185 tgtgtgcttgcgagtgaatggaggatagatagttccttattctctttgtacacctatcat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgtgtgcttgcgagtgaatggaggatagatagttccttattctctttgtacacctatcat 444
Query: 245 ctgctctctgcaggtgtttacaattaaattagaacatttgctccctcaaaggctaaaagt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctgctctctgcaggtgtttacaattaaattagaacatttgctccctcaaaggctaaaagt 504
Query: 305 tcctcctttggattccaaatagtagatagtggagtatataaactcaattgtattctaggc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcctcctttggattccaaatagtagatagtggagtatataaactcaattgtattctaggc 564
Query: 365 acccttgatacaaaatatctaactacttcattttaagaggttgttaatgataaatcatct 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 acccttgatacaaaatatctaactacttcattttaagaggttgttaatgataaatcatct 624
Query: 425 tgattgcccatgtggaagaacagtaacaacagctaagatggaatagaaccttttctcagg 484
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 625 t---tgcccatgtggaagaacaggaacaacagctaagatggaatagaaccttttctcagg 681
Query: 485 tttgtaaacagtatttagcttaataacaaagagactgcattcaaaagagatgggaaatca 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tttgtaaacagtatttagcttaataacaaagagactgcattcaaaagagatgggaaatca 741
Query: 545 acaggactactgctgcctcctggaaacattcaact 579
|||||||||||||||||||||||||||||||||||
Sbjct: 742 acaggactactgctgcctcctggaaacattcaact 776
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 976
Length adjustment: 10
Effective length of query: 569
Effective length of database: 966
Effective search space: 549654
Effective search space used: 549654
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no427_d19.g1 MSMg01no427_d19.g1 CHROMAT_FILE:
MSMg01no427_d19.g1 PHD_FILE: MSMg01no427_d19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:03 2005
(496 letters)
>mm_chr12_6169116_6170011
Length = 896
Score = 756 bits (391), Expect = 0.0
Identities = 446/487 (91%), Gaps = 35/487 (7%)
Strand = Plus / Minus
Query: 10 aaacataaaatatttagggcagtggtggtgcatgcctttaatcccagcacttgggaggca 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896 aaacataaaatatttagggcagtggtggtgcatgcctttaatcccagcacttgggaggca 837
Query: 70 gaggcaggagggtttctgagttcgaggccagcctggtctacaaagtgagttccaggacag 129
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 836 gaggcaggagggtttctgagtttgaggccagcctggtctacaaagtgagttccaggacag 777
Query: 130 ccagggctacacagagtaaccctgtctcgaaaacaaaacaaaacaaaacaaaacaaaaca 189
|||||||||||||||| ||||||||||||
Sbjct: 776 ccagggctacacagagaaaccctgtctcg------------------------------- 748
Query: 190 aaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacagatta 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 ----aaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacagatta 692
Query: 250 tatatttagggtctagaaaagcctggatttgggggagaaaatctaagatactaaatgctt 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 tatatttagggtctagaaaagcctggatttgggggagaaaatctaagatactaaatgctt 632
Query: 310 atatttaaaaaaattcaggaatttcaaactaatgattaatttccgatttacaatgacaaa 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 atatttaaaaaaattcaggaatttcaaactaatgattaatttccgatttacaatgacaaa 572
Query: 370 gacaaagatttttagagtttatactggtgaaaagtagaaatgacaaagagaagaaatcag 429
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 571 gataaagatttttagagtttatactggtgaaaagtagaaatgacaaagagaagtaatcag 512
Query: 430 agaaataaaaacaaaagataataatatctaaaactagtatctgacaccttcataaaacta 489
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct: 511 agaaataaaaacaaaagataataatatccaaaactagtatctgacaccttcataaaaata 452
Query: 490 tattttt 496
|||||||
Sbjct: 451 tattttt 445
Score = 188 bits (97), Expect = 9e-52
Identities = 152/175 (86%), Gaps = 14/175 (8%)
Strand = Plus / Plus
Query: 31 gtggtggtg---catgcctttaatcccagcacttgggaggcag----aggcaggagggtt 83
||||||||| |||||||||||||||||||||| |||||||| ||||| || ||
Sbjct: 129 gtggtggtgacacatgcctttaatcccagcacttaggaggcagacacaggca-ga---tt 184
Query: 84 tctgagttcgaggccagcctggtctacaaagtgagttccaggacagccagggctacacag 143
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 185 tctgagtttgaggccagcctggtctacagagtgagttccaggacagccagggctacacag 244
Query: 144 agtaaccctgtctc-gaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaa 197
|| ||||||||||| ||||| |||| |||| |||| |||| |||| |||| ||||
Sbjct: 245 agaaaccctgtctcagaaaaaaaaaaaaaaaaaaa-aaaa-aaaagaaaagaaaa 297
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 2
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space: 430596
Effective search space used: 430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
