Query= MSMg01no428_e05.b1 MSMg01no428_e05.b1 CHROMAT_FILE:
MSMg01no428_e05.b1 PHD_FILE: MSMg01no428_e05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:23 2005
(578 letters)
>mm_chr12_7901054_7902030
Length = 977
Score = 1079 bits (558), Expect = 0.0
Identities = 573/578 (99%), Gaps = 1/578 (0%)
Strand = Plus / Minus
Query: 1 caataacttgtgttcaaaataacccatgggaaaattaatgggtatgttttctttttaaaa 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 677 caataacttgtgttcaaaataacccatgggaaaattaatgggtatgttttctttttgaaa 618
Query: 61 acttggaaccatatcaaacatgtaaaataaaacagtgtagccctgtccccatcatccaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 acttggaaccatatcaaacatgtaaaataaaacagtgtagccctgtccccatcatccaga 558
Query: 121 gccactgctgcccttttgcttaatttgttatctctctgaactgttttcatgtctggttat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gccactgctgcccttttgcttaatttgttatctctctgaactgttttcatgtctggttat 498
Query: 181 gttttccttgcagctggtagcgcaacatctgaatactcatgatttatatgacatcatgca 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gtttttcttgcagctggtagcgcaacatctgaatactcatgatttatatgacatcatgca 438
Query: 241 gtagatctatatcttgcatcgattcttcctatgcttgtgatatgaactatgcatgcagtc 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gtagatcta-atcttgcatcgattcttcctatgcttgtgatatgaactatgcatgcagtc 379
Query: 301 tcagtctgttacacttcagtactgtacagtgtattttatgcaattgtttagtcaccaatg 360
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 378 tcagtctgttacacttcagtactgtacagtgtgttttatgcaattgtttagtcaccaatg 319
Query: 361 gagggaaagttagttgccaagttcccagatcttacaaacagtgtgtaaggctcaacttcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gagggaaagttagttgccaagttcccagatcttacaaacagtgtgtaaggctcaacttcc 259
Query: 421 catataagttttgatatctaagtcaaattgtctcccttgaaaagatatatctgtgtaagt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 catataagttttgatatctaagtcaaattgtctcccttgaaaagatatatctgtgtaagt 199
Query: 481 attgttctctttgtttctatttggttgatttcaaccctgagtttgactatttcctgccat 540
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 198 attgttctctttgtttctatttggttgatttcaaccccgagtttgactatttcctgccat 139
Query: 541 cctcttgggtgtgtttgtttctttttgctttcaggtgt 578
||||||||||||||||||||||||||||||||||||||
Sbjct: 138 cctcttgggtgtgtttgtttctttttgctttcaggtgt 101
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 977
Length adjustment: 10
Effective length of query: 568
Effective length of database: 967
Effective search space: 549256
Effective search space used: 549256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no428_e05.g1 MSMg01no428_e05.g1 CHROMAT_FILE:
MSMg01no428_e05.g1 PHD_FILE: MSMg01no428_e05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:24 2005
(570 letters)
>mm_chr12_7741430_7742399
Length = 970
Score = 1079 bits (558), Expect = 0.0
Identities = 564/566 (99%)
Strand = Plus / Plus
Query: 1 cttagatacccagatcttaaagattctactttagccagtgaacattcaggcttaacttgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttagatacccagatcttaaagattctactttagccagtgaacattcaggcttaacttgg 260
Query: 61 tggtgggataaggagagcaaaaaatactatagtaaaatattggtaagcacccactccact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggtgggataaggagagcaaaaaatactatagtaaaatattggtaagcacccactccact 320
Query: 121 ctttgtgaggccaaagatttggtgagagtctttaggaggtatgaaagctcacatctaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctttgtgaggccaaagatttggtgagagtctttaggaggtatgaaagctcacatctaaaa 380
Query: 181 gtaaaatgtaaaaagaggagccaatagggcaaaatgtgagcacggagtcaggagcaggtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtaaaatgtaaaaagaggagccaatagggcaaaatgtgagcacggagtcaggagcaggtt 440
Query: 241 ttatattcttagaggggacaaaagaagtgagcattgagccttgcttatctaaagaaagga 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttatactcttagaggggacaaaagaagtgagcattgagccttgcttatctaaagaaagga 500
Query: 301 atgagttttagaacaggttaaaaagaaagaacaaaataaagtgtaagatatattactgat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgagttttagaacaggttaaaaagaaagaacaaaataaagtgtaagatatattactgat 560
Query: 361 gaggtatgagacagtcatgaaagcaaagcctgcatgaaccatttgtttagattctattct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaggtatgagacagtcatgaaagcaaagcctgcatgaaccatttgtttagattctattct 620
Query: 421 tggagtgttttcctgagcaggggttttctgaacgtgaccagatttccattttttaaagct 480
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 621 tggagtgttttcctgagcaggggttttctgaatgtgaccagatttccattttttaaagct 680
Query: 481 tgttttaactgtagtaggtaagaagttgtttgagggactggagagctgactcagtggtta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgttttaactgtagtaggtaagaagttgtttgagggactggagagctgactcagtggtta 740
Query: 541 agagcattgtctgttcttccagagga 566
||||||||||||||||||||||||||
Sbjct: 741 agagcattgtctgttcttccagagga 766
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space: 537600
Effective search space used: 537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
