BAC Information

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BAC

Clone NameMSMg01-428I19
Chromosome12 (Build37)
Map Location 14,453,255 - 14,453,509
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC627189, LOC100043243, LOC100042396, LOC238091, EG633789, LOC668481, AW125753
Downstream geneLOC100043256, Map1lc3-ps7, LOC668492, LOC100042426
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428I19.T7 (MSMg01no428_i19.b1)MSMg01-428I19.TJ (MSMg01no428_i19.g1)
ACCAG521489AG521490
length768767
length of high quality
(start - end)
500 (44 - 543)---
definitionCHROMAT_FILE: MSMg01no428_i19.b1 PHD_FILE: MSMg01no428_i19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:45 2005CHROMAT_FILE: MSMg01no428_i19.g1 PHD_FILE: MSMg01no428_i19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTAGGATTGCTTCAATGTCTGTAAGTACCTTCCACTCGTGAGGTCAAG
TAGTTTCCCTTCAGACAAATACCTTGAATATCTAACTCCCAGTACCTTAG
ACTGTGATATTTGGAAATATGTTTCATATACACTTAAGTTAAAACTAAGG
TGTTTGCTTGGACCCTGACCGGATATGATTCAATTTTGAGATTGAGATGT
GAACACAGCAAGAATGATGGGTGAAAGCGTATACAGAATGATGTTTGTAT
GAACCAAGAAATGCCAAAATTACTAAAAACACCAAACAGTGTAAACACCA
CCTACAAAAGCAGTCGACTAACTCTGAAATGGTGATCTCAGGAATACTGC
TTTCAGAGTCCCAGCATCAAGATCCATAGACAACATATTGGATCCAGAGC
TTGTTATACTTTATTATGGAAGTCCTTGAAAACAAATATGGTCCCAAGTC
AAGTTTAGGGTTACCACTCTGATGTATTTGTCTTTTTATGAACATTGTAC
CATTTATAGCGACCATTAACTAATTCCATTACCATCTAAAACTGGTTCAG
GTTTTTCCACTGATCTATGTTACTGAAATTTAATTTTTTTTCAACATGTA
TGCTAAAAATTTGGAGACACATATTATCCCCTACTCATCTCGTTCCTTCA
TTCCACAGTTTTGTTCGCAAACCTTTCTTCACATTCTGCCCTTTTAATTC
CTTCCCGCTTATTTTTCC
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTTTCAGTTTCCTGGTGTCTCAAATTCTTCCTATAGT
ANATGATAGCCTATTGCCACATTTTAACCATCCACCTAAGAGAGACNAAT
TNGNAAAGAATTTTGGGAATAAAAAGTATTGGAGAAAAAGGGGGCCAAAA
CAAATACCTACAGCGTGGAAAATGATAAAAAAAAAGGAGAAGAGTTCCTG
NGGAATGGTTGGAAACCAGGACGCGNNNNNGGACGTGATAAGGTGGGGGG
AGGGGGGGGGGGATAACTAAANCCNCTGGATTTAATGTGAAACCCGGAAN
AAACCCTAAAAAAAAGCCCCCTCCTTTTTTAAATTTAAAAAAAGAGCCCC
AATGTTTTTTAAATGGGGGGAAAAATTTTAAATTTTCTCCCCTTTTTAAA
AAAATTCTTTTTTTTTTTTTTTCCCCCTTTTTTTTTTTTTTTTTTTTTAA
AAAAAAATTCCTTTTTTCNTCTTTTAAAATTTTCCAAAAANNNNNTCCCC
CCCTCTTTTTTTCTCCTNTTTTTTTTTTTTTTTTNNNTNTNTNTCNTCCC
CCTTTTTTTTTTNTTTTTTNTTTTTTTTCTTTCNTTNNNTTTTTTTTTTT
TTTTNNCTTNTTNNTTTCNTNTTTTTCTNNTTTTTTTTTTTTTTTTTTTT
TTTTTTNTTNNTNNTTTNNNTTTTTTTTCTTTTTTTTTCTCTCTCTCCCA
CCACCAAAGAACAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_i19.b1 MSMg01no428_i19.b1 CHROMAT_FILE:
MSMg01no428_i19.b1 PHD_FILE: MSMg01no428_i19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:45 2005
         (500 letters)



>mm_chr12_14452810_14453709
          Length = 900

 Score =  410 bits (212), Expect = e-118
 Identities = 245/256 (95%), Gaps = 2/256 (0%)
 Strand = Plus / Minus

                                                                       
Query: 246 tgatgtttgtatgaaccaagaaatgccaaaatta-ctaaaaacaccaaacagtgtaaaca 304
           |||||||||||||||| ||||||||||||||||| || ||||||||||||||| |  |||
Sbjct: 700 tgatgtttgtatgaacaaagaaatgccaaaattacct-aaaacaccaaacagtctttaca 642

                                                                       
Query: 305 ccacctacaaaagcagtcgactaactctgaaatggtgatctcaggaatactgctttcaga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 ccacctacaaaagcagtcgactaactctgaaatggtgatctcaggaatactgctttcaga 582

                                                                       
Query: 365 gtcccagcatcaagatccatagacaacatattggatccagagcttgttatactttattat 424
           |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 581 gtcccagcatcaagatccatagacaatatattggatccagagtttgttatactttattat 522

                                                                       
Query: 425 ggaagtccttgaaaacaaatatggtcccaagtcaagtttagggttaccactctgatgtat 484
           ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 521 ggaagtccttgaaaacatatatggtcccaagttaagtttagggttaccactctgatgtat 462

                           
Query: 485 ttgtctttttatgaac 500
           |||||||| |||||||
Sbjct: 461 ttgtctttctatgaac 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space:   436100
Effective search space used:   436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)