BAC Information

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BAC

Clone NameMSMg01-428K05
Chromosome12 (Build37)
Map Location 100,457,573 - 100,457,805
singlet/doubletsinglet
Overlap geneChes1
Upstream geneGalc, Gpr65, Kcnk10, Spata7, Ptpn21, Zc3h14, Eml5, LOC100039845, Ttc8, EG667779
Downstream geneLOC100039892, 2610021K21Rik, Tdp1, LOC100040041, Kcnk13, Psmc1, BC002230, Calm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428K05.T7 (MSMg01no428_k05.b1)MSMg01-428K05.TJ (MSMg01no428_k05.g1)
ACCAG521557AG521558
length797782
length of high quality
(start - end)
233 (84 - 316)59 (170 - 228)
definitionCHROMAT_FILE: MSMg01no428_k05.b1 PHD_FILE: MSMg01no428_k05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:52 2005CHROMAT_FILE: MSMg01no428_k05.g1 PHD_FILE: MSMg01no428_k05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCACATGGATCCG
CGGAATTCTCCCCCTGACAACAGGCAGGNNNGNGAGTAGATATTTCTATA
GCATACAGCACCACAGTTTGTGAACGTCACCTCTCATTTACATCCTAGGC
CATAGGAAGCACTAATGCTGACATAGCTCTGCACCTGGAGCATCCCCTTC
AAAACTGAACATGCACATGCATGCACACATACAGCCACGCCTATGCGTGA
TTTTTTGCAGAGGTATGCTTCGAGTTCTCACTGTCAGGACCGAGGAGATG
AGAAAGGGACCCGCTATTTACTCCTGTTGGAGATGNCCTCCCGCCCCCCC
CCCCACAATTTTTTCCTCCTCCCCCATTCCTCTCTTTGATTTTTTCACTC
CTCCTCCCTTCATTCTCCCTTTTTTTCTTCCTTGTGTACACCCCCTCATT
TCTTACCTCTCTTCTTTCCTTCCTCCTCCCCCCTGTTTCTCTCCTACGTT
CCCCCTCTTCCACTCCTTTTTCCCCTATCCTCCCTATCCCTTTATCCCTT
CTCCTCTCCCTCCCCTTTCCCATTTTCCATATTGCTCTTCTATTTTTAAT
TTTTATTTTCCCTCCTTTTTTCCTTTTCCTCTCCCCTCTGTTTTTTTATT
TTTTACTTCCTCCTTCCCATTACTTCTCCCTTTTTTTTTTCCCCCTCCTC
CATCCCTCTTGTCTTTTCCCCCCACCATTTTTCCTTCCTCTTCCTTTTTT
CCCCTTCCCTACCCTTGTTATTCTTTCCACCCCTCTGTTTTTTTTCC
GACGAATAGTAATGGTAGTCTGGAGGACGGCTGTGTCACAAXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAACCAGCACCCCTGGGGCGGAGC
CTCTGAGAATCCTCCGATAAGGCGATAGGATCTAGATGCATCTGCTCATA
CAAATGTGGAAAGACAAGGCTTTCTCTCTAGCTAAAATGATCCTTTCCCT
CAGCTTGTCGCCCTCATTGCCTTATGGGATGTCTCGTCACCACACTTGTT
TTTGGCTCGGCTTTGTCAGTTCCAGAATTTGTGTTGCCCACAGAAACTGG
AACATGCGGTTTGCTCATTTTTTTTTAAAGCCGGCCATTTCTCTATCACT
TTTGTCTTCCTGCCAGCTTCCCCCCCCTTTTTTGTCACCCCATCCGGCTC
TTACATACTTTACTTCTTATCGAGTGGTTTTGAAGACCATCCCCCCCTTC
TTTATAAATTTTACCCTTCACTTCCTTTCTCTTTCCCCTTTCTCATTAAA
TAACCCCCTCCCGTCCACCATATTTTTTTTCCCCCCTTTTTTTTTGCTAT
TTCTCCTTTCTTCCCCTCCTTTTTTTTTTTTTTCTCCCCCCTCTCCTTCC
TTTTCCTTTCCCCTCTCTTTTATCTTTTTTCCCCTTCCTTCCTTTTCTCT
ATTTCCTCCCCCCCCCTTTTTTTTTTTATATATTTTTTTCCTTTCCTTCT
TTCACACGCCTCTCACCTCTTTTTCCCTCCTTTTTTCTTTTACACATCCC
CTTTTTTCACACCATTATTTTTCCCCTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_k05.b1 MSMg01no428_k05.b1 CHROMAT_FILE:
MSMg01no428_k05.b1 PHD_FILE: MSMg01no428_k05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:52 2005
         (233 letters)



>mm_chr12_100457373_100458005
          Length = 633

 Score =  406 bits (210), Expect = e-118
 Identities = 227/238 (95%), Gaps = 10/238 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagtagatatttctatagcatacagcaccacagtttgtgaacgtcacctctcatttacat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gagtagatatttctatagcatacagcaccacagtttgtgaacgtcacctctcatttacat 374

                                                                       
Query: 61  cctaggccataggaagcactaatgctgacatagctctgcacctggagcatccccttcaaa 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 cctaggccgtaggaagcactaatgctgacatagctctgcacctggagcatccccttcaaa 314

                                                                       
Query: 121 actgaacatgcacatgcatgcacacatacagccacgcctatgcgtga-----ttttttgc 175
           |||||||||||||||||||||||||||||||||||||||||||||||          |||
Sbjct: 313 actgaacatgcacatgcatgcacacatacagccacgcctatgcgtgagccag-----tgc 259

                                                                     
Query: 176 agaggtatgcttcgagttctcactgtcaggaccgaggagatgagaaagggacccgcta 233
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 agaggtatgcttcgagttctcactgtcaggaccgaggagatgagaaagggacccgcta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space:   139776
Effective search space used:   139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)