BAC Information

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BAC

Clone NameMSMg01-428N14
Chromosome12 (Build37)
Map Location 4,966,232 - 4,966,739
singlet/doubletsinglet
Overlap geneAtad2b
Upstream geneC030014M07Rik, C330021A05Rik, Adcy3, Cenpo, 2410017P09Rik, Ncoa1, LOC100041995, LOC100042005, LOC100042014, Itsn2, 4930417G10Rik, A830093I24Rik, Pfn4, EG626534, 0610009D07Rik, Fkbp1b, BC068281, Gm1964, Ubxd4
Downstream geneLOC668332, Klhl29, 2810032G03Rik, LOC435292, LOC100042095, LOC672098
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428N14.T7 (MSMg01no428_n14.b1)MSMg01-428N14.TJ (MSMg01no428_n14.g1)
ACCAG521718AG521719
length746751
length of high quality
(start - end)
508 (71 - 578)303 (325 - 627)
definitionCHROMAT_FILE: MSMg01no428_n14.b1 PHD_FILE: MSMg01no428_n14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:09 2005CHROMAT_FILE: MSMg01no428_n14.g1 PHD_FILE: MSMg01no428_n14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCACAAATCACGTGTTTACAATCTAGCATGGTCTGAGTAAGTATAT
CTCAAACATTCATTTTTTAAATTTCTGAACCATTAGGGTAGCACTTAGAT
TAAAAGGTGGTACAATGTTCAGGAGGCCGTGTGTCATAGGTCTGGCCTGC
TATTTCACCTTTCCTTTCCGACTAATGAACTATAATGTGAGAAGTTTTGT
TCTGACATTTGCTCCAGCATCATGTACTTTTTTAGCAAGGTACTAATCGA
GGCTAAGACCAGCAAATTTTTTAGCAGATGTACTTGTTCTCCACCTAGGA
AACTGGCCCAAGCACTTACTATAGTGACAGGAAAGCATCTACAATACAAC
TATGACAGTAAATAGCATAGGGTTTTATAAGATTCCTCCCACAAATATTT
AACATTTTCTATGTGTGCCATTTCCTCAGTAACACTATAATCTACGATTA
CTTTCCATCCCAGGTTTCCAGTGAGACTAACAGTCAACCACAGCAGGTGC
TTTGTGGATCACCATCATCATCCTCAGAGACCTAGGACGTGGGCCTAAGT
GTAAGGAGATTCTCCTCTGCGAGCTCTGCTCACTTCATGCAGCTTCTATT
TTGCACACCACAAATGGTTTGCAATCTTGCTTCTGTACAAACATGTACCA
AGATTTTTTCCCTGTCTTTTATTAAAGCAACCGATGTGTCCAGTCC
CGATGATAGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTAGTCAGATGGGAAACAGTGCGTGT
GGATGTACCATAAGAGGAGAGAGTACTTCCCTTAGTCCTCCCAGTTTACA
ATTAAACTGAGGGAAACTAGGAAAGGGGATAGCATTTGAAATGTAAATAA
AGAAAATACATAATAAAAATAAGATTAAACTGGGGGTATAGCTCAGGGAT
AGTGTGAGGAGCCGCCCTCACATTCGCCATTATAAGATGGTGCTGACAGC
TGTGTTCTAAGTAGTAAATTTTTTCTGCACACGTGCAGGGGCAGTTTTCC
CGCCATGTGTTCTGCCTTTCTCGTGATGACAACTGGGCCGATGGGCTGCA
GTCAATCAGGGAGTAATACGTCCTAGGCGGAGGATAATTCTCCTTAAAAG
GGACGGGGTTTTGCCATTCTTTTTCTCTCTCTTGTTCTTGCTTTTTCTCT
CTCTTGTTCTTGCTTTTTCTCTCTCTTGTTCTTGCTTTTTCTCTCTCTTG
TTCTTGCTTTTTCTCTCTCTTGTTCTTGCTTTTTCTCTCTCTTGCTCTTG
CTTTCTTGTTCTTTTTCTCTCTCTTGCTCTTGCGCTCTTGCACTCTGGCT
CCTGAAGATGTAAGCCATAAAGCTTTTGCCGCAGAAGATTCTGGCTTGTT
GCGTTCTTCCCGGCCGGGCGCGAATGTGCGTAAGAATTGGCGCCGAAACG
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_n14.b1 MSMg01no428_n14.b1 CHROMAT_FILE:
MSMg01no428_n14.b1 PHD_FILE: MSMg01no428_n14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:09 2005
         (508 letters)



>mm_chr12_4966032_4966939
          Length = 908

 Score =  920 bits (476), Expect = 0.0
 Identities = 500/508 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tacaatctagcatggtctgagtaagtatatctcaaacattcattttttaaatttctgaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 tacaatctagcatggtctgagtaagtatatctcaaacattcattttttaaatttctgaac 649

                                                                       
Query: 61  cattagggtagcacttagattaaaaggtggtacaatgttcaggaggccgtgtgtcatagg 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 648 cattagggtagcacttagattaaaaggtggtacaatgttcaggaggccatgtgtcatagg 589

                                                                       
Query: 121 tctggcctgctatttcacctttcctttccgactaatgaactataatgtgagaagttttgt 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 tctggcctactatttcacctttcctttccgactaatgaactataatgtgagaagttttgt 529

                                                                       
Query: 181 tctgacatttgctccagcatcatgtacttttttagcaaggtactaatcgaggctaagacc 240
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 528 tctgacatttgctccagcatcatgtactttgttagcaaggtactaatcgaggctaagacc 469

                                                                       
Query: 241 agcaaattttttagcagatgtacttgttctccacctaggaaactggcccaagcacttact 300
           ||||||  |   ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 agcaaacatgagagcagatgtacttgttctccacctaggaaactggcccaagcacttact 409

                                                                       
Query: 301 atagtgacaggaaagcatctacaatacaactatgacagtaaatagcatagggttttataa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 atagtgacaggaaagcatctacaatacaactatgacagtaaatagcatagggttttataa 349

                                                                       
Query: 361 gattcctcccacaaatatttaacattttctatgtgtgccatttcctcagtaacactataa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 gattcctcccacaaatatttaacattttctatgtgtgccatttcctcagtaacactataa 289

                                                                       
Query: 421 tctacgattactttccatcccaggtttccagtgagactaacagtcaaccacagcaggtgc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 tctacgattactttccatcccaggtttccagtgagactaacagtcaaccacagcaggtgc 229

                                       
Query: 481 tttgtggatcaccatcatcatcctcaga 508
           ||||||||||||||||||||||||||||
Sbjct: 228 tttgtggatcaccatcatcatcctcaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space:   447204
Effective search space used:   447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)