Query= MSMg01no429_a01.b1 MSMg01no429_a01.b1 CHROMAT_FILE:
MSMg01no429_a01.b1 PHD_FILE: MSMg01no429_a01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:21 2005
(566 letters)
>mm_chr12_74049716_74050683
Length = 968
Score = 1017 bits (526), Expect = 0.0
Identities = 557/568 (98%), Gaps = 2/568 (0%)
Strand = Plus / Minus
Query: 1 gaattccatgccttaaacccatgtgaaggtagagagacctgactttacaaagttgttcac 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 gaattccatgcctcaaacccatgtgaaggtagagagacctgactttacaaagttgttcac 709
Query: 61 tgacatgtgtaccatggtatatgtgctccatactgacacatacaaacatctctctct--c 118
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 708 tgacatgtgtaccatgatatatgtgctccatactgacacatacaaacatctctctctcac 649
Query: 119 tcacacacacacgtatacatacacacaccagaaaaatttaaaatggaaattatatatagc 178
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 acacacacacacgtatacatacacacaccagaaaaatttaaaatggaaattatatatagc 589
Query: 179 atttcttttctttagcatttaaccaggaaaagtgaggcagagactcattctttcaacatc 238
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 588 atttcttttctttagcatttaaccaggaaaagtgaggcagagactcattctctcaacatc 529
Query: 239 tgttatatgaagggctacagaggtgcttgcatgcactgctcacagtactcctgagtatca 298
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 528 tgttatatgaagggctacagaggtgcttgcatgcactgctcacagtattcctgagtatca 469
Query: 299 atagccctgcgttatggaagcaaaacccaaaatctctgagagtccagtgacttatccagc 358
||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct: 468 gtagccctgcgttatggaagtaaaaccccaaatctctgagagtccagtgacttatccagc 409
Query: 359 ttcataatgattgggaatttcagaccagatttgttgaatctgccttgtcagctccaaagc 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 ttcataatgattgggaatttcagaccagatttgttgaatctgccttgtcagctccaaagc 349
Query: 419 catagctgcagactgcttaaatatagttttcttcttttgttgatgcattttccaatttac 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 catagctgcagactgcttaaatatagttttcttcttttgttgatgcattttccaatttac 289
Query: 479 atctcatatagccacagttagttgcaaagataatcttacaaagaaatgttctagtataca 538
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 288 atctcatatagccacagttagttgcaaagataatcttagaaagaaatgttctagtataca 229
Query: 539 agctgtttatttagctgaaaaatacaaa 566
||||||||||||||||||||||||||||
Sbjct: 228 agctgtttatttagctgaaaaatacaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 968
Length adjustment: 10
Effective length of query: 556
Effective length of database: 958
Effective search space: 532648
Effective search space used: 532648
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no429_a01.g1 MSMg01no429_a01.g1 CHROMAT_FILE:
MSMg01no429_a01.g1 PHD_FILE: MSMg01no429_a01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:21 2005
(591 letters)
>mm_chr12_73910873_73911864
Length = 992
Score = 1098 bits (568), Expect = 0.0
Identities = 586/592 (98%), Gaps = 1/592 (0%)
Strand = Plus / Plus
Query: 1 aaacacaggagtctatggggccattcctatttaaaccaccacacaaggctacaaaacaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 aaacacaggagtctatggggccattcctatttaaaccaccacacaaggctacaaaacgaa 260
Query: 61 tagaaaatgggtagagacaggtaactacagcaaggatctgtggtgggctgcagtggtttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagaaaatgggtagagacaggtaactacagcaaggatctgtggtgggctgcagtggtttg 320
Query: 121 agtgaaaattactcccccacgttcaggatttgaactcttggttttcagttgtgtgacagg 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtgaaaattactcccccgcgttcaggatttgaactcttggttttcagttgtgtgacagg 380
Query: 181 gcaaggcagtgcagaggtttcttcatcttgtattcttacttaggccatttcaggatcaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcaaggcagtgcagaggtttcttcatcttgtattcttacttaggccatttcaggatcaac 440
Query: 241 tactatttgatctccctaatggagaatcccatggaaagttacccagttctattctaggac 300
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tacaatttgatctccctaatggagaatcccatggaaagttacccagttctattctaggac 500
Query: 301 caaaggtcaatatgccccagctaacttatcatagcttcttctattaaactgcttgcttgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caaaggtcaatatgccccagctaacttatcatagcttcttctattaaactgcttgcttgc 560
Query: 361 acagaacccttccctaactaccagtttaacttagcatctgttaagctgcttg-cttgtgc 419
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 561 acagaacccttccctaactaccagtttaacttagcatctgttaagctgcttggcttgtgc 620
Query: 420 aaccccctcccatgcctgcagctgctgagtgagatatcaaagtgtggattctgcttttaa 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaccccctcccatgcctgcagctgctgagtgagatatcaaagtgtggattctgcttttaa 680
Query: 480 aagttccttggtataaatgcttgggtctgccaaatacctgagtgtagtttctgctggctg 539
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aagtcccttggtataaatgcttgggtctgccaaatacctgagtgtagtttctgctggctg 740
Query: 540 gaataaagactttcaattggctatatgctgtctggcttcttgccacattttg 591
||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 741 gaataaagactttcaattggctatatgctgtctggcttcttgcaacattttg 792
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 992
Length adjustment: 10
Effective length of query: 581
Effective length of database: 982
Effective search space: 570542
Effective search space used: 570542
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
