BAC Information

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BAC

Clone NameMSMg01-429N04
Chromosome12 (Build37)
Map Location 100,633,878 - 100,634,079
singlet/doubletsinglet
Overlap geneChes1
Upstream geneKcnk10, Spata7, Ptpn21, Zc3h14, Eml5, LOC100039845, Ttc8, EG667779
Downstream geneLOC100039892, 2610021K21Rik, Tdp1, LOC100040041, Kcnk13, Psmc1, BC002230, Calm1, Ttc7b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429N04.T7 (MSMg01no429_n04.b1)MSMg01-429N04.TJ (MSMg01no429_n04.g1)
ACCAG522461AG522462
length749781
length of high quality
(start - end)
482 (32 - 513)202 (75 - 276)
definitionCHROMAT_FILE: MSMg01no429_n04.b1 PHD_FILE: MSMg01no429_n04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:25 2005CHROMAT_FILE: MSMg01no429_n04.g1 PHD_FILE: MSMg01no429_n04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAATTCACTAAA
TATTTAAGGAAGAAATAACACATATTTTCCACCAACTCTTCCAGAGAATA
GAAAAAAGCAGGAATACTCCCAACTTGTTTTAAGAAGCCAACCAAATTTT
GATTCTAAAACCTGACAAAAACATTGTAAGACAGGAAAATTCCAGGTCAG
CTATACTTCTGTATATTAATTTAAAAATCGGAATCAGAGGGTGCAGGAGA
ATGGCTTGGTTGTTAACAGCACTTACAGCTCTTGTAGAGGACTGGTTCCC
AGCATCCACGTCAGGCAGGCTACAAGCACCTGGCATTCTGGTCCCAGGCA
ATCTGACGCCCCCTCCTGGCCTTTGAGGGCATCTGTACTCAAATAAGCTC
ACAGAGGCATACACACATTTAAAATCAACTTTAGCTGAGCAGTGGTGGCA
CACACCTTTAATCCCAGCACTCAGGAGGCAGACGCAGGCAGTTTGAGTTT
GAGGCTAGCCTAGTCTACAGAGAGAGTTCCAGGATAGCCAGCTCTACATT
GACCCTGTCTCACAAAAGTCTTTTTTATTTACGAGAACTCCCTCCACCTA
CACCACTAAAATACCACTCTTGGAAAAGCAGTACCAACCTGCTATTTTAA
CAACCCTTGACCGGCTATTGTACATGCCACCCAAGTGAACCTATCCCCAC
TCCCCCTTGGACCTCAAATCATTACCTCACCGCCCCACTCCCTTCCGCC
AATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTCTATAGATGAAGCTGGCCTCAAC
CTCAGAGATCCACCTGCCTCTGCTTCCCAAGGACTGGGATTAAAGTCACA
TGCCACCACTGCCCAGCAACATTTATTTTCTGATTGCCGACTTGATGGAA
TCACTCCGTACCCCATCTGGACACAGACTTGTGTTCTGGGACAGCCAGCG
CAAGGCAGTATAGGCCTCCATTCCTCCTTCGTGGTTCTTAACGGAATAAC
TGATAGTCCCTCAAAGTTTTTTTTTCTAAGTAGATTCCACATAGACCTTG
TCGCACGTGTTAACACCTGACGCAGGCCTGACCAGACTTTTCTCCGTTTC
AATGCCTCTCCAACTGCCCCTCGCCACCCCCTCACCGTTTCTTGCCGGTT
CGCCCTTGCCCCACCGCTTTTTCATCTCTCTTTTCCCCCCTTCCCCCACC
CCCCCCCCCACCTCATTTTCTCTCCACTTCTCTTACCCTTCCCCCCGCCT
TTTCCCCCCCCCTTCTCCCCTTTCCNNCTCTCTTTTTCCCTTCCTCTTTT
TTTCCCCCTCCCCCAACCTTTCTTCCCTTTCCTCCCTTCTCTCTCTTTCA
CCCCCATCTTCCTTTCCCACCCGCCCCCCACCCTTTCCCTCTTATTTTTT
CCCCTTCCTTTTTATTTCCCCCCTCACTTTTCTTTTACTTTTTTATCCTT
TCTTTTTTCTCCTTCCCCCCCCCCCTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_n04.g1 MSMg01no429_n04.g1 CHROMAT_FILE:
MSMg01no429_n04.g1 PHD_FILE: MSMg01no429_n04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:25 2005
         (202 letters)



>mm_chr12_100633678_100634279
          Length = 602

 Score =  383 bits (198), Expect = e-111
 Identities = 201/202 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actctatagatgaagctggcctcaacctcagagatccacctgcctctgcttcccaaggac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actctatagatgaagctggcctcaacctcagagatccacctgcctctgcttcccaaggac 260

                                                                       
Query: 61  tgggattaaagtcacatgccaccactgcccagcaacatttattttctgattgccgacttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggattaaagtcacatgccaccactgcccagcaacatttattttctgattgccgacttg 320

                                                                       
Query: 121 atggaatcactccgtaccccatctggacacagacttgtgttctgggacagccagcgcaag 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgggatcactccgtaccccatctggacacagacttgtgttctgggacagccagcgcaag 380

                                 
Query: 181 gcagtataggcctccattcctc 202
           ||||||||||||||||||||||
Sbjct: 381 gcagtataggcctccattcctc 402


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 202
Length of database: 602
Length adjustment: 8
Effective length of query: 194
Effective length of database: 594
Effective search space:   115236
Effective search space used:   115236
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)