BAC Information

Click to search

BAC

Clone NameMSMg01-430A07
Chromosome12 (Build37)
Map Location 25,642,684 - 25,733,802
singlet/doubletdoublet
Overlap geneMboat2, EG629397, C330002I19Rik
Upstream geneLOC546534, 9030624G23Rik, EG668710, LOC100042945, EG668711, EG668714, LOC629364, Taf1b, Grhl1, EG629383, Klf11, Cys1, Rrm2, LOC668719
Downstream geneId2, LOC100042973, LOC100042974, LOC668726
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-430A07.T7 (MSMg01no430_a07.b1)MSMg01-430A07.TJ (MSMg01no430_a07.g1)
ACCAG522611AG522612
length743743
length of high quality
(start - end)		456 (49 - 504)421 (82 - 502)
definitionCHROMAT_FILE: MSMg01no430_a07.b1 PHD_FILE: MSMg01no430_a07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:40 2005CHROMAT_FILE: MSMg01no430_a07.g1 PHD_FILE: MSMg01no430_a07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,642,684 - 25,643,136)(25,733,382 - 25,733,802)
sequence
GGATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCCAGCCTCACTCTGCCGTGCCGTATACTAGCAGTTACTTCC
TGATCCTAAGCCGAGCAGTTCCAAGTTCCTTCATGGAGCAGTTCATCCCA
TTCAGCCCAAGGGTGGTCGCCCCAGGAGGAGAACCTGCCCCATCTCAGGA
AGACCTAGTGTAGCCTGAGTGTCCCAAATGTGGCTACAAGAAGAATAGGG
GGAATGCTTCACCAATTACTAATAAACTTGACTTTTTCCAGTCATAGAAA
AGGAAAGGATTGCACTTGACTGGCCGCTGTGGTCCTCTGTGTTTCAGAAG
TTGCTGTCCTGAACTCTGTGGCTTTCCTCACTCTTTCCTTTCCTCTCCCT
GCCCCACCAATGTTCACTTTTCCCATGTTGGTGAGATCGTTGATTAGAAG
CTTGGTTCTATCCAGTTCTTCATTTCTATGGGATTTGGAGGCTTAGCATA
AGAGCATGTGATCTAAGAATTAGACTCAAACATTAGAATTGAGTTATGTA
TTCACATGGGAAAAACAAGTAATGCGTTAACGTACCCATTTTAACAAAGC
TGTTTATTTCGGTGGGTATACTGCTAGGTATTCTGTTTTCTATTGTTTTC
TTCCCAAACTTGTACTTTTTCCCCTTTGTTAATTGTCCACTTCCCTTTCT
TCTCATATTTCCCCCATTGTTTTGAATTTTCCCAAGGTTTGCN

NNNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAACTAATGCACATGGCAG
AGAGAAACAGAAATCCCCACCAGGCAAACACCACCACTACAGCAGCTGTA
TTATAAACTCCATCAATGGCCATCAATTAAAGGGCAAAAGCCAAGCAAGT
TGAACAGGACATTGCAGAGTTTCAAATGTCTACCCCAAGAGTGCATTAGT
TTAAAAATAGAAAGGAAGAACGCTGTAAAGTATTGACACCTAGCAGAGGC
CACCTCAGCCACGGAGTGAAGAGCACGTCTGACTCCTATGTGTACGTTGG
TCTTTATCAAGCAATAAGTTACTAATTTAAAAACCATATATGTTCCAATA
GTTTCTTTGAATGAAGGAGAAATGTGAATCACTTTCCAAGCCTTTTCTAA
AGTAATATTATATACTAAAATTACTTTTAAATTAAATGAACCTTATAGCT
GAAATAATGAATTTTAATTGAAATATCATAAGAGGAATATAAACATTAAG
TTGCTAAATTCTTAAAAGAAACTAATTAAATTTGAGAGGGAAACAAGAAA
TCCCAAAGGTAAATCCTTTAACATGGCAGGGGGTGCCCTCCCTTTGAAAC
CCCCCCGGGGGTAATCCAAAAAACAAAACGCTCTTCAGAAAAACTGGGTT
TTTTCTTTTCTTAAAATTTATTTTTATAAAAATTTTTTCCTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no430_a07.b1 MSMg01no430_a07.b1 CHROMAT_FILE:
MSMg01no430_a07.b1 PHD_FILE: MSMg01no430_a07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:40 2005
         (456 letters)



>mm_chr12_25642481_25643336
          Length = 856

 Score =  876 bits (453), Expect = 0.0
 Identities = 453/453 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctccagcctcactctgccgtgccgtatactagcagttacttcctgatcctaagc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctccagcctcactctgccgtgccgtatactagcagttacttcctgatcctaagc 263

                                                                       
Query: 64  cgagcagttccaagttccttcatggagcagttcatcccattcagcccaagggtggtcgcc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cgagcagttccaagttccttcatggagcagttcatcccattcagcccaagggtggtcgcc 323

                                                                       
Query: 124 ccaggaggagaacctgccccatctcaggaagacctagtgtagcctgagtgtcccaaatgt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ccaggaggagaacctgccccatctcaggaagacctagtgtagcctgagtgtcccaaatgt 383

                                                                       
Query: 184 ggctacaagaagaatagggggaatgcttcaccaattactaataaacttgactttttccag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggctacaagaagaatagggggaatgcttcaccaattactaataaacttgactttttccag 443

                                                                       
Query: 244 tcatagaaaaggaaaggattgcacttgactggccgctgtggtcctctgtgtttcagaagt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tcatagaaaaggaaaggattgcacttgactggccgctgtggtcctctgtgtttcagaagt 503

                                                                       
Query: 304 tgctgtcctgaactctgtggctttcctcactctttcctttcctctccctgccccaccaat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgctgtcctgaactctgtggctttcctcactctttcctttcctctccctgccccaccaat 563

                                                                       
Query: 364 gttcacttttcccatgttggtgagatcgttgattagaagcttggttctatccagttcttc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gttcacttttcccatgttggtgagatcgttgattagaagcttggttctatccagttcttc 623

                                            
Query: 424 atttctatgggatttggaggcttagcataagag 456
           |||||||||||||||||||||||||||||||||
Sbjct: 624 atttctatgggatttggaggcttagcataagag 656


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space:   377316
Effective search space used:   377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no430_a07.g1 MSMg01no430_a07.g1 CHROMAT_FILE:
MSMg01no430_a07.g1 PHD_FILE: MSMg01no430_a07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:40 2005
         (421 letters)



>mm_chr12_25733232_25734052
          Length = 821

 Score =  814 bits (421), Expect = 0.0
 Identities = 421/421 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caactaatgcacatggcagagagaaacagaaatccccaccaggcaaacaccaccactaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 caactaatgcacatggcagagagaaacagaaatccccaccaggcaaacaccaccactaca 512

                                                                       
Query: 61  gcagctgtattataaactccatcaatggccatcaattaaagggcaaaagccaagcaagtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 gcagctgtattataaactccatcaatggccatcaattaaagggcaaaagccaagcaagtt 452

                                                                       
Query: 121 gaacaggacattgcagagtttcaaatgtctaccccaagagtgcattagtttaaaaataga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 gaacaggacattgcagagtttcaaatgtctaccccaagagtgcattagtttaaaaataga 392

                                                                       
Query: 181 aaggaagaacgctgtaaagtattgacacctagcagaggccacctcagccacggagtgaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 aaggaagaacgctgtaaagtattgacacctagcagaggccacctcagccacggagtgaag 332

                                                                       
Query: 241 agcacgtctgactcctatgtgtacgttggtctttatcaagcaataagttactaatttaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 agcacgtctgactcctatgtgtacgttggtctttatcaagcaataagttactaatttaaa 272

                                                                       
Query: 301 aaccatatatgttccaatagtttctttgaatgaaggagaaatgtgaatcactttccaagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 aaccatatatgttccaatagtttctttgaatgaaggagaaatgtgaatcactttccaagc 212

                                                                       
Query: 361 cttttctaaagtaatattatatactaaaattacttttaaattaaatgaaccttatagctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 cttttctaaagtaatattatatactaaaattacttttaaattaaatgaaccttatagctg 152

            
Query: 421 a 421
           |
Sbjct: 151 a 151


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space:   334544
Effective search space used:   334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |