BAC Information

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BAC

Clone NameMSMg01-430D17
Chromosome12 (Build37)
Map Location 39,656,573 - 39,656,929
singlet/doubletsinglet
Overlap geneLOC100043145
Upstream geneDgkb, LOC668824, LOC100043142, Etv1
Downstream geneLOC100043148
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-430D17.T7 (MSMg01no430_d17.b1)MSMg01-430D17.TJ (MSMg01no430_d17.g1)
ACCAG522774AG522775
length8151,488
length of high quality
(start - end)
359 (72 - 430)---
definitionCHROMAT_FILE: MSMg01no430_d17.b1 PHD_FILE: MSMg01no430_d17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:59 2005CHROMAT_FILE: MSMg01no430_d17.g1 PHD_FILE: MSMg01no430_d17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGGAGGATTGCGTTGGGGACTTCAGATTCACAAAAATTGTCAT
GTAACTTATTTTTTTTCCTTGTTCTTGTGAACTCTGTTCACTTCTGTTTC
ATGGAAGATCTTTGCAACGAAACTGCTCCTTGATTTCTGGTTTGTGTATA
TCCTTACCCCCGCCCCCCCACCCCTTCAAAGTTCTCATCTTGTCTCTGTA
ACATCAGAACCAAAAATAATTCAGTTGCTTTAAATGCCATATGGAATAAA
TAAATGTTTCTAAACAGATCAAATTAAATTTCCTGTAAAACTTCTCAGCA
TTGGTTGCTCTGATTAAATATGGAAGGGGAGCAAAAGCCACAGCATTGGC
GGGCTTATAAAAGAGAAATGAAAAGAATTCGGAAAGCAAAAGACTAAAGT
CAGTTGGTGAATTGTAATGTGATGTACCATTTGTTATTTTCATAACTTCC
ATATGCTCTGACTACTTTTTTATCTACCATTACACTCACTAATCCCTTCC
CTTTTAAACAACCTTATTTTCTCTTTCTCTCTTTTTCTCTTTAACCCTTT
CTTTACCTCACTTTTACCCTTCGATTTTTTTCCCTCTCTACTTTATTTTA
TTACTCCCCAATCACTCATCTTTCCTATTACTCCCTATTACCCTACCTTC
TTTATCACCCCCTTTATTCTTAAATACCTCTCATAACCCCTACACTTTCC
CATCCTATCCCAATAATTCCTTTTACCCCCAATTTACGTGACCAATCCTT
ACTTTATTCCAATTT
AAACTCCTAATAGTTATAGTGTTGANNAGNGCACNNAGAAGTAGGTTGTC
GGCGAGAGACTGCTCGGCNCTGGTCTAGATCGACGANGGAGGAGAGCTGN
NTGCAGTGGTGANCNTCGCAGCCTGCGCGGAGCTAGCGCTANTCCACAGC
GGTGCACGGCGNGCAGCACGTGCATGCGNGCCACNCTCGCCGCNCGACTG
CGGTAGTATATACGATGGATGCTCGCTAATATAGGATAGATACAGCTGTA
TCTAGCTTCGTGCATAGTATCTAACTACTACAACACACCACGATATGCGT
GCACAACCCGCCCTATACAACCACACANACACACAATAACTATCACACCG
ATACAGCCGCCGACGAAGCTCGAATGCCAAGCATACTACATCTATTGTGT
TNACGCTACTACGTTATATCTGTATATCGTGCCTCGTTATCCTANTATCT
GCCANCNTATATCATCTATACGACGAGTATCCGCTATGCCCGCTCGAAGT
CGNTGCGTATATATAANATATAGACGAGCAGAACTNATAAGTACGCTATA
CACAAGGCATATCCATATACTCNACTGATTATACCACATGCATACTNCAA
TCTGTATACGTAGNCGCTAGTCAGCGTCATGAGCGCACATTCGACGGTAT
ATACGTCGACGATCATTACTCACGCGTATATAGCAGCTATGTTCGCCGTG
TGTTTGCTATACGATAGTGGATCACTATGCGCTACGTGCTACGACGTATA
CATATGTACCTACCAGCGCGTGATACGCGATATAGCTACTATCATTGCGT
GACNAGTATACCCTATAACCACGACCTATCAANCGATGAGTGTAGTGCGG
CGCCACGTATATGAGACGCATGATACTNAGCAGCTGGACGACTGTATGAT
GGTATGGAGTTATGACTAGGTGACGCTCAGAATCATCACANCGCGATACG
TCGTAATAGTAATGTAGACGCACGAGCGACCGCTGATATTAAATCAGCGC
AGACATAGGTATTCAGACGGCGCAGACTGCATGAGTCGCAGCAACCGGTG
ACGGAGCGCGAGCGATACGATCTATTNTCTATACAGCGCCGCATGTGTGC
GTAGTCAGCTTGTGTACTATAGTACTCGCCGCTATTGTCTCATATCGATG
TCGAGTAGAGTATCAGCTAGGTCGGGAGAATAGTCGTCGCTGCGCATAGA
TCTGTGGCGAGTGTCGATGCCGCAGTGAGTGATCGGGTGGCGCCGAGCAC
GATGATCAGTAGCACGATACGGCGCACAACCAGTTATGATCACCGATNGA
TAATAGTATAACGCGATGANTATGGCGCACATAATCGATATTACAACACG
GANGCGATCGATATCTCGACGTCGCACTATACACGGCATATATGATGTTG
TGAGGCGTGTGTATAGCGTCGACTACTGCGCNNAGTAGCTCTCTGCGCAT
GCGTTTTNCGGTCTGTCGTCGATGATATCGCGCGCATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no430_d17.b1 MSMg01no430_d17.b1 CHROMAT_FILE:
MSMg01no430_d17.b1 PHD_FILE: MSMg01no430_d17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:59 2005
         (359 letters)



>mm_chr12_39656373_39657131
          Length = 759

 Score =  659 bits (341), Expect = 0.0
 Identities = 353/357 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggggacttcagattcacaaaaattgtcatgtaacttattttttttccttgttcttgtgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggggacttcagattcacaaaaattgtcatgtaacttattttttttccttgttcttgtgaa 260

                                                                       
Query: 61  ctctgttcacttctgtttcatggaagatctttgcaacgaaactgctccttgatttctggt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 ctctgttcacttctgtttcatggaagatctttgcaacgaaactgctccttgatttccggt 320

                                                                       
Query: 121 ttgtgtatatccttacccccgcccccccaccccttcaaagttctcatcttgtctctgtaa 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgtgtatatccttacccccgtccccccaccccttcaaagttctcatcttgtctctgtaa 380

                                                                       
Query: 181 catcagaaccaaaaataattcagttgctttaaatgccatatggaataaataaatgtttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catcagaaccaaaaataattcagttgctttaaatgccatatggaataaataaatgtttct 440

                                                                       
Query: 241 aaacagatcaaattaaatttcctgtaaaacttctcagcattggttgctctgattaaatat 300
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaacagatcaaattaaattccctgtaaaacttctcagcattggttgctctgattaaatat 500

                                                                    
Query: 301 ggaaggggagcaaaagccacagcattggcgggcttataaaagagaaatgaaaagaat 357
           ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggaagaggagcaaaagccacagcattggcgggcttataaaagagaaatgaaaagaat 557


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 759
Length adjustment: 9
Effective length of query: 350
Effective length of database: 750
Effective search space:   262500
Effective search space used:   262500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)