BAC Information

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BAC

Clone NameMSMg01-430I16
Chromosome12 (Build37)
Map Location 21,467,002 - 21,467,310
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042755, LOC100043377, LOC625810, 1700030C10Rik, 3110053B16Rik, LOC668698, LOC546752, EG629257, Ddef2, Itgb1bp1, Cpsf3, Iah1, Adam17, Ywhaq, LOC100043407
Downstream geneLOC100042796, 6030426L16Rik, LOC434693, EG668645, EG668646, LOC100043416, LOC668650, EG668496, LOC668653
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-430I16.T7 (MSMg01no430_i16.b1)MSMg01-430I16.TJ (MSMg01no430_i16.g1)
ACCAG523012AG523013
length793807
length of high quality
(start - end)
487 (49 - 535)309 (78 - 386)
definitionCHROMAT_FILE: MSMg01no430_i16.b1 PHD_FILE: MSMg01no430_i16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:26 2005CHROMAT_FILE: MSMg01no430_i16.g1 PHD_FILE: MSMg01no430_i16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAAGGCCTTTACCTAAACATGATAAAAGCAATCTACAGCAAAC
CAGTAGCCAACATCAAAGTAAATGGTGAGAAGCTTGAAGCAATCCCACTA
AAATCAGGGACTAGACAAGGCTGCCCACTTTCTCTTCAACATAGTACTTG
AAGTCCTAGCCACAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAA
ATTGGAAAAGATGAAGTCAAAATATCACTTTTTGCAGTTGATATGATAGT
ATATATAAGTGACCCTAAAAATCCTTCATAGAACTCCTAAACCTGATAAA
CAGCTTCGGTGAAGTAGCTGGATATAAAATTAACTCAAGCAAGTCAGTTG
CCTTTCTCTACACAAAGAATAAACAGGCTGAGAAAGAAATCAGGGAAACA
ACACCCTTCTCAATAGTCACAAATAATATAAAATACCTTGGCGTGACTCT
AACTAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAGTCCCTGAAGA
AAGAAATTAAAGAAGATCTCATAAGATGGAAAGATCTCCCATGCTCATGG
ATTGGCTGGATCAACTTTGGCAATAAGGGGTTTCCTTGCCCACAGCCATT
TTTATTATTTCCCCGGTATTTCTCATCTATATATCCAACTCTCGTCTTTC
CCTAATTTTAACTAGTAAGGAGCATTCTGGCCAATCTACCCTGCTATGAT
ACACATAACCCTTCGATTTATCCCATGCCTCTTCTCCTCGTAN
CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTAACCTCCAGTGGGTACTGCATG
CGTGTGGTATACATACGTACATGCAGGCAAAATACCTACATACAAAAAAT
TAAATTAATAAAACAGTTAATCTTATAAATTCAGTGAATTTAAAAATAAA
ATATATAAATTATAAATAACGTATACAACTAGTTGATATAATAATATGCT
TTTAATTGTTACCATCTTAACTTTGTTTTTTTATTCTTTTAATATTTTTG
AGTCAGTGTTTTTTACTAGTCTCTCTTTTTTCTTTAAAGATGTCAGAATG
CATGTGAACCCTTTGTGTGAACCCTTCTGCTTTTGGCAGCTGAGGAGACA
CTGGTTTAACGCTCACTCTCCGAGCTGAATTGTAGCTTTTGTATCCCTGT
ATTTTTGCTTTTGGTCATATTAAACTTTCTTTTTCTGCCCATTTTATTCT
CTGTTTCTTTATTGTCTTATCAAAATCCCTTGTTCACCTATTTCTTCTTA
ACTTTCCTCTCTTCTCCGTCTTCATCTATCTTCCCCTTTTATCAATTTCA
ATCCTATTTTCATCCCCTTTTTTTTCAACCCCCCTCATCCTCCCCAACTT
ATTTCTTCCCCCTCTCCCATCCTGACCTATCCTCCTCCCTCTTATAAATC
TGAACCCCCGCCCTCCTCTTTCCTATTAATCTTCCCCATGCATCTTACTC
CTATCCTCCCTATATTCCCATTTATCACCCCCTTTCCTCCTATTTCCCAA
ACCTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no430_i16.g1 MSMg01no430_i16.g1 CHROMAT_FILE:
MSMg01no430_i16.g1 PHD_FILE: MSMg01no430_i16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:53:26 2005
         (309 letters)



>mm_chr12_21466802_21467510
          Length = 709

 Score =  559 bits (289), Expect = e-164
 Identities = 304/309 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   taacctccagtgggtactgcatgcgtgtggtatacatacgtacatgcaggcaaaatacct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taacctccagtgggtactgcatgcgtgtggtatacatacgtacatgcaggcaaaatacct 260

                                                                       
Query: 61  acatacaaaaaattaaattaataaaacagttaatcttataaattcagtgaatttaaaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acatacaaaaaattaaattaataaaacagttaatcttataaattcagtgaatttaaaaat 320

                                                                       
Query: 121 aaaatatataaattataaataacgtatacaactagttgatataataatatgcttttaatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaatatataaattataaataacgtatacaactagttgatataataatatgcttttaatt 380

                                                                       
Query: 181 gttaccatcttaactttgtttttttattcttttaatatttttgagtcagtgttttttact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttaccatcttaactttgtttttttattcttttaatatttttgagtcagtgttttttact 440

                                                                       
Query: 241 agtctctcttttttctttaaagatgtcagaatgcatgtgaaccctttgtgtgaacccttc 300
           ||||||||   ||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 441 agtctctcccatttctttaaagatgtcagaatgcatgtgaaccctttgtgggaatccttc 500

                    
Query: 301 tgcttttgg 309
           |||||||||
Sbjct: 501 tgcttttgg 509


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space:   210000
Effective search space used:   210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)