Query= MSMg01no430_l03.b1 MSMg01no430_l03.b1 CHROMAT_FILE:
MSMg01no430_l03.b1 PHD_FILE: MSMg01no430_l03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:53:40 2005
(472 letters)
>mm_chr12_98066444_98067315
Length = 872
Score = 820 bits (424), Expect = 0.0
Identities = 457/468 (97%), Gaps = 2/468 (0%)
Strand = Plus / Plus
Query: 5 gaattccaaacataaaggtattgataaaagagagaaaatctttgtaaagacccattagaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaaacataaaggtattgataaaagagagaaaatctttgtaaagacccattagaa 264
Query: 65 gacattggtactctgaaaacaaaataccaggaaagtatcaagtttaatgtagtaatccat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gacattggtactctgaaaacaaaataccaggaaagtatcaagtttaatgtagtaatccat 324
Query: 125 gggagaagagaggaacctttaaaagatagaaaattgtgtgtactataattgtgtgaatga 184
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 325 gggagaagagaggaacctttaaaagatagaaaattgtgtgtgctataattgtgtgaatga 384
Query: 185 ctcagaagagaccagagaatgagagtgcctaaaatataatgtcttaacagagtgtgttca 244
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctcagaagagaccagagaatgaaagtgcctaaaatataatgtcttaacagagtgtgttca 444
Query: 245 taaactagcaagtatatttcctgaaacttggaagtctccaagaaagacacatatatctcc 304
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 taaactagcaagtaaattccctgaaacttggaagtctccaagaaagacacatatatctcc 504
Query: 305 aatgataatacataaaatatttaaatatcttaagttacaaggcaaacaaaatgcaccttt 364
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aatgctaatacgtaaaatatttaaatatcttaagttacaaggcaaacaaaatgcaccttt 564
Query: 365 tgaacactaaggaacctttactaactaaatatgacaccgaggcagccaaactaaagtatg 424
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct: 565 tgaacactaaggaacctttactaactaaatatgacaccgaggtagccaaattaaagtatg 624
Query: 425 gaaaataaaaaaaaaatatatgaaataaaatgttgaccaaatgagcag 472
|||||||||||||||| | |||||||||||||||||||| ||||||||
Sbjct: 625 gaaaataaaaaaaaaa-a-atgaaataaaatgttgaccacatgagcag 670
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space: 398244
Effective search space used: 398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no430_l03.g1 MSMg01no430_l03.g1 CHROMAT_FILE:
MSMg01no430_l03.g1 PHD_FILE: MSMg01no430_l03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:53:40 2005
(404 letters)
>mm_chr12_98243672_98244475
Length = 804
Score = 758 bits (392), Expect = 0.0
Identities = 401/404 (99%)
Strand = Plus / Minus
Query: 1 agtgtgtttttcagagagatttccaggatatccaagggtacacagagaaaccttgtcttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 agtgtgtttttcagagagatttccaggatatccaagggtacacagagaaaccttgtcttc 631
Query: 61 gacaaaacaaaacaaaacaaaacaaacaaatgggtttctattattcaaatatctgagctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 gacaaaacaaaacaaaacaaaacaaacaaatgggtttctattattcaaatatctgagctg 571
Query: 121 aacctgagaagcctgtaattatctgcatgaccttagaaactgtacttcatttctttatca 180
|||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 570 aacctgagaaacctgtaattatctgcatgaccttagaaacggtgcttcatttctttatca 511
Query: 181 tgcaaagtaatacaagcagacactgagcaggatactgaaatatgaaaatgtggctttggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 tgcaaagtaatacaagcagacactgagcaggatactgaaatatgaaaatgtggctttggt 451
Query: 241 aggactataaaaatctgttattactattgattcattggagttgatatgacaggattgttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 aggactataaaaatctgttattactattgattcattggagttgatatgacaggattgttt 391
Query: 301 tgaaagtcaggttccttcattattttatgagcaaaataagaatgttgaggcaaaatgaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tgaaagtcaggttccttcattattttatgagcaaaataagaatgttgaggcaaaatgaat 331
Query: 361 tctgtgagttttatataatataatgcaaaatataatttagatac 404
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tctgtgagttttatataatataatgcaaaatataatttagatac 287
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 804
Length adjustment: 9
Effective length of query: 395
Effective length of database: 795
Effective search space: 314025
Effective search space used: 314025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
