BAC Information

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BAC

Clone NameMSMg01-430L09
Chromosome12 (Build37)
Map Location 69,381,856 - 69,382,206
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040745, LOC100040681
Downstream geneLOC100040696, LOC665967, LOC665973, Rps29, Ppil5, Rpl36al, Mgat2, 1110034A24Rik, 9330151L19Rik, Pole2, Klhdc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-430L09.T7 (MSMg01no430_l09.b1)MSMg01-430L09.TJ (MSMg01no430_l09.g1)
ACCAG523140AG523141
length761747
length of high quality
(start - end)		420 (54 - 473)354 (82 - 435)
definitionCHROMAT_FILE: MSMg01no430_l09.b1 PHD_FILE: MSMg01no430_l09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:41 2005CHROMAT_FILE: MSMg01no430_l09.g1 PHD_FILE: MSMg01no430_l09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCCTTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTTTGTTCACTTCTGAGCCCCATTTTTTAATGGGGTTA
TTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATAT
CAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTG
GTGGTCTTTTTGTCTTATTGACAGTGTCTTTTGCCTTGCAGAAGCTTTGC
AGTTTCATAAGGTCCCATTTGTCAATTCTCAATCTTACAGAGCAAGCCAT
TGCTGTTCTATTCAGGAATTTTCCCTTTTGCCCATATCTTCAAGGCTTTT
CCTCACTTTCTCCTCTATAATTTTCAGTGTCTCTGGTTTTATGTGAAGTT
CCTTAATCCACTTGATTTCACCTTAGTACAAGGAGATAGGAATGGATCGA
TTTGCATTCTTCCATGTGATAACAACCAGTTGTGCCAGCACCATTTGTTG
AAAATTCTGTCTTTCTTCTACTGGATGGCTTTAGCTCCTTTGCCTAAAAT
CATGAGACTATATTCGTGTGTATCCCTTTCTTGGTTCTCCCCCTCCTTTC
CTTTAGCTCCCCTTTGTCTGTCATTCCTAATCTCCCCCATGCCCTCCTAT
TTTATTTCCCCACTTTTTTTTTTTTCCGCCCTAATCCGCAATCCCTTCCC
CACCTTCTCCATCAATTGCTCTTCTCCCTTTTTTATGTCCTCCCCTCTCT
TCTTCCATTCC

TTTCCTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATATCTGAGAGTATTTTG
CATAGCTGGGAAGACAGTCATGTTAATATTAAAATAGACCCTTCTGTTTT
CAGCTACACTGGGTAGCAGCAGAATCAGTCACAGTGAAAAGCTTAGGTCT
GATACATACTATCTTTGGTTAAGTTAAACATAATATGAAGAAAAGAAACA
AAATCAGTGTAATGAAAACTTGGGACATCATGTCAAAAACAATTGGGAAA
TAAAGAAATGGTAAGATCTGAGCAACAAATTTGCAGTCTGAGATAAAACT
TCCGCAGAAGAAATGACCAATAGGATACAGCAAACTAGAGCCTAGTGAGA
CTCTTTACCTATGGGGGGAGGTGATAAGGAGGNGNNNNNNNNNNNNNNTN
NNNNNNNNNNNTNNNNNTNNNNNNNNNTNNNNNTTTTTTTTTTTTTTTTN
TTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTNNNNTTTTTTNTTTTTTTTTTTTTNTTTTTTTTTT
TTTTTTTTTTTTTNNTTTTTTTTTCTTTTTCTTTTTTTCTTTCTTTTNTN
TTTTTTTTTTTTNTTTCTTTTTTTTTTTCCCTTCTCCCCCCCCTCTCCTT
TTTCTCCTCTTTCTCTCCCTTCTCCTCCTCTTTCTTTTCTTTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no430_l09.g1 MSMg01no430_l09.g1 CHROMAT_FILE:
MSMg01no430_l09.g1 PHD_FILE: MSMg01no430_l09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:53:41 2005
         (354 letters)



>mm_chr12_69381656_69382409
          Length = 754

 Score =  679 bits (351), Expect = 0.0
 Identities = 351/351 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatatctgagagtattttgcatagctgggaagacagtcatgttaatattaaaatagaccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatatctgagagtattttgcatagctgggaagacagtcatgttaatattaaaatagaccc 260

                                                                       
Query: 61  ttctgttttcagctacactgggtagcagcagaatcagtcacagtgaaaagcttaggtctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctgttttcagctacactgggtagcagcagaatcagtcacagtgaaaagcttaggtctg 320

                                                                       
Query: 121 atacatactatctttggttaagttaaacataatatgaagaaaagaaacaaaatcagtgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atacatactatctttggttaagttaaacataatatgaagaaaagaaacaaaatcagtgta 380

                                                                       
Query: 181 atgaaaacttgggacatcatgtcaaaaacaattgggaaataaagaaatggtaagatctga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgaaaacttgggacatcatgtcaaaaacaattgggaaataaagaaatggtaagatctga 440

                                                                       
Query: 241 gcaacaaatttgcagtctgagataaaacttccgcagaagaaatgaccaataggatacagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcaacaaatttgcagtctgagataaaacttccgcagaagaaatgaccaataggatacagc 500

                                                              
Query: 301 aaactagagcctagtgagactctttacctatggggggaggtgataaggagg 351
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaactagagcctagtgagactctttacctatggggggaggtgataaggagg 551


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 754
Length adjustment: 9
Effective length of query: 345
Effective length of database: 745
Effective search space:   257025
Effective search space used:   257025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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