BAC Information

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BAC

Clone NameMSMg01-431E06
Chromosome12 (Build37)
Map Location 90,467,182 - 90,467,618
singlet/doubletsinglet
Overlap geneNrxn3
Upstream geneEG666862, EG435337, LOC100039154, LOC633093, LOC667440, LOC100039383, EG266459, LOC667475, LOC620915, LOC435314, Adck1, LOC100039261, EG666915
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431E06.T7 (MSMg01no431_e06.b1)MSMg01-431E06.TJ (MSMg01no431_e06.g1)
ACCAG523564AG523565
length789957
length of high quality
(start - end)
436 (40 - 475)---
definitionCHROMAT_FILE: MSMg01no431_e06.b1 PHD_FILE: MSMg01no431_e06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:30 2005CHROMAT_FILE: MSMg01no431_e06.g1 PHD_FILE: MSMg01no431_e06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
GACAGATTGAGAGAGAATCTATAGATGGTACCATGTCAGTGAGAATGTAT
ATGTTCTAGTAGAACAGAGAATATATATGTGCAGTTAAGGTAGTTTGGGG
TTAAATGATGAATAATTGTGGCTATTAGAAAAAAAATTGTCTTCAGATCC
ATAAAAGTTTCCTATCCAATTGTCCTATTTTTGTTTTTATTAGAAACTTT
TGTCATTATTAGCTTTTTAGTTAATGTATATTCACGTTTCTGATTTTGCA
TCTTGCTTAATATTAATGTTATATCAATGACTTCCTTATAAAATTTTAAA
GAATATCATAGTCACACCAGTGGTATTTGCATAAATATTTTTATATTAAA
AGATTTCATACATGCGCACTGTATGTATATAACTCTCAGAACCTGCTTCT
AACCCCTCTCTCTATATGAATACAACCTGTTGATCACTTTGGGTTGAATA
ATTAACTCAAAACCCTGTTCCTATATAACACTGCACTTTCCCTTTCTCCT
CAGGGGTTAATTGCCCTCTGGGTATGGCCCCCCCCCGGTCATTTTCCTCA
GGTGGGCTTTTATAATTTTTCTCCCTTTTACTTATATGTCTCCTTCTTTC
TCTCCTTGCAATTTTTTATTCCTTTCTACATTACCTATCCCTCTAGTCCC
CTTCTTTATCCCTTTTATTTTCTTACCCTCTCTCCTCTTTTTTTTTATCT
TTTCTTCCCCTCTTCTCTCCGTATTTTCCTTCTTCTTCN
TAGAGAGTCTGGATTGCGTACATTCCCTGGCTTTGCCTTCATAGTGGTGG
ACTTCCTCAACACAGAACACACAGGGGATACTAGTGTGAAAAAAAGAGGA
CAACCACAATGCGACACACCCATAGAGAGGGGAGACGAGGGGAGAAGGAC
ACAACTCGAGGGAGCTAAGACAAGTACGTTGACTGATGCTGCGATATGGT
ATGAGTCGACTTGACTGGTACTGAAGAGTCGGCTACGGTTTACCGCACCA
TCGATGTTTATTTAACGACTAGTATTGGACTATCCTATCGTAGTCGGATG
CATTGTTCGTCCCGCCGGTAAAATGTAAACTCCGACGTATTCATGCCTTA
TATATATCCGTCCCGCGGCATAGCCAGTAGTCTCTCCATACTTGACTGTG
TGAGCGGGCATACCGTTGACTCCTCTTATATGCGGAGCGGCTTTGCGCGA
ATGAGGAGTGGCGCGATACGAGAACTTGTTATACCAGATAACGGGGAAGT
GTTTGACCGACTCCATCACCTGAGCTCTTGGCACGGACATTTGTAATGCA
CCTACACAGGTTAATGAACCCAGCGCACTTTGCCGAAGAAACCGATATAC
CTACGCGGTGACCCGAACATAACAATTTTATTTTAATTTTTCCCTCTTTT
TGTCCGTCCACTTTCACTCACCGCCCCATTCGGACAGCAACGCTGTGTAT
ACGATTGATCGACCCGCAGCGGTTATCGTCGGTGTAACGTAACTTGCGTA
GACTGTTTCGATGATGAGGCGATTGGCCCTGCGGAGTCTACACGTATTCC
TTTCTTCCCTATCGCGGCGCCTTATTGAGATGGAGTTAGAAACAAATGAT
GCGTTATGATGAGAACGCGATACGTATGCGAGATACATCCAGCGTCCGTA
AGAAGGTGTACATCGCGGCTCACGCTCCCTATCGTACCAATTCGACAATA
CGCTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_e06.b1 MSMg01no431_e06.b1 CHROMAT_FILE:
MSMg01no431_e06.b1 PHD_FILE: MSMg01no431_e06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:30 2005
         (436 letters)



>mm_chr12_90466979_90467818
          Length = 840

 Score =  764 bits (395), Expect = 0.0
 Identities = 425/437 (97%), Gaps = 4/437 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagacagattgagagagaatctatagatggtaccatgtcagtgagaatgtatat 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 204 ggaattcagacagatggagagagaatctatagatggtaccatgtcagtgagaatgtacat 263

                                                                       
Query: 64  gttctagtagaacagagaatatatatgtgcagttaaggtagtttggggttaaatgatgaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gttctagtagaacagagaatatatatgtgcagttaaggtagtttggggttaaatgatgaa 323

                                                                       
Query: 124 taattgtggctattagaaaaaaaattgtcttcagatccataaaagtttcctatccaattg 183
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 taattgtggatattagaaaaaaaattgtcttcagatccataaaagtttcctatccaattg 383

                                                                       
Query: 184 tcctatttttgtt----tttattagaaacttttgtcattattagctttttagttaatgta 239
           |||||||||||||    |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 384 tcctatttttgtttttgtttattagaaacctttgtcattattagctttttagttaatgta 443

                                                                       
Query: 240 tattcacgtttctgattttgcatcttgcttaatattaatgttatatcaatgacttcctta 299
           |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 444 tattcaagtttctgattttgcatcttgcttaatattaatgatatatcaatgacttcctta 503

                                                                       
Query: 300 taaaattttaaagaatatcatagtcacaccagtggtatttgcataaatatttttatatta 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 taaaattttaaagaatatcatagtcacaccagtggtatttgcataaatatttttatatta 563

                                                                       
Query: 360 aaagatttcatacatgcgcactgtatgtatataactctcagaacctgcttctaacccctc 419
           |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aaagatttcatacatgtgtactgtatgtatataactctcagaacctgcttctaacccctc 623

                            
Query: 420 tctctatatgaatacaa 436
           |||||||||||||||||
Sbjct: 624 tctctatatgaatacaa 640


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 840
Length adjustment: 9
Effective length of query: 427
Effective length of database: 831
Effective search space:   354837
Effective search space used:   354837
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)