BAC Information

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BAC

Clone NameMSMg01-431H19
Chromosome12 (Build37)
Map Location 91,518,010 - 91,684,082
singlet/doubletdoublet
Overlap geneNrxn3, LOC100039498
Upstream genenone
Downstream geneLOC100039287, Dio2, LOC100039295, 4930544I03Rik, 4930534B04Rik, 5430427M07Rik, Tshr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431H19.T7 (MSMg01no431_h19.b1)MSMg01-431H19.TJ (MSMg01no431_h19.g1)
ACCAG523734AG523735
length774780
length of high quality
(start - end)		481 (34 - 514)251 (62 - 312)
definitionCHROMAT_FILE: MSMg01no431_h19.b1 PHD_FILE: MSMg01no431_h19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:49 2005CHROMAT_FILE: MSMg01no431_h19.g1 PHD_FILE: MSMg01no431_h19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,518,010 - 91,518,486)(91,683,833 - 91,684,082)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTGAAA
TGTTGCGTCTAGAAGAGAAGTAATATAACTAACAATTCTTAACTTCCCAA
GCTTTGTGATTTTTAAATATCTATGATTTAATGTGAAAAAAAATCTAGGG
ATGTATGTATATTGATATTGATCAAAGATAATAGTAAACGATGGCAAAAA
ATAGTTACTTTCTGAACTTAAAGTATTCAAAATTTTATATCTCACTTGAG
GTCATAAGCTAGCCTGTAGTCAGTCACTAGGATGTTGATAACTAAAAAGG
AACTCTGATGTCCATTATTTAAATACAGAATGAATGTTCTTAAGGCAGGT
ACATAGGCCTCCTCTGCTGACAGCCATGAGACACTTCAATCTCCAACTCT
TACTCTTGGGATAGAAATATAAAAGGGAAATGCTTAAGCCACAAGCATTT
GAAGGGATTTAATTCCGTTTAGCATGGAGCAGCTGCTGAGATATATGGCT
GTTTTCTGTGGGACTTTGGGATATTTATGGGCTTTTCTCTTTTCCCCTTT
CTACTGGAGAATGGAGATCATCATTCATGAGNGTGGTATTTATAATTTCA
TAAAGCTGTGCTGTGGCAGGACTTATTTATCCCACCCTTAATCTCGGTCC
AATAATCCAATTTTTAGGAGCTAGGAAGGGAAAAAAGTTTAACCCTTAAA
CATTACCCCCCGGCCGGCTCATAATAAGGGTTTTGGGTGAAATTTTTAGT
CCACCACAACAATTTACGCCCGGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXACTCTCCTTTAAGAAATCTGCATGCCACATGCTAGATGG
AAACCTCAACCTGAAGAACACTGAATACAGTTGAATGAACCAATACATTT
CATTCTGGAACTTTGAACACAGTTTCCATACTTAGCCTGTTAAGTGTTCT
GTAGGGGAAATTGGAAATCTCAGGTTGATGGATGGAGAGGTGTACTCAGA
AAGTTGTCCAGTCTCCTTTGCCTGGTACCTTGGATGCACATAAGAGCAAC
AAAGCATCCTCTCTCTCCCAGTGCGTAAGTTTCCTTTGACAAGGGTTTCC
ATTATGCAGATGAGTACAGTTTGAAGGACTCACAAATGTAAAGATAACGC
TGATGTAGTACATGCAAAATAATTTAATATTCTGAGAAATGATCCTTATT
ATTTCTTTGTTCCCAGATGAATACTTTTTTTTCCCATTTTCCTAACTGAT
TAATTACTATCGAATGCGATATGATTTGATATTATATGCTCCGCCCTTCC
GTTATTCATCTATATAATCTTTCTACTATCCACCCTTTCCCCTCATTTCC
CTTTTTTCTTGTTTTTACCTTCCCTCCCATTTTACTCTTTTTTTGTTTTA
TCCCCTTTCTGTTTTCTTTCATTTTTACTCTCCTTATAACACTTCTTAAC
TCCCTTATTCTCTTTTCCCTTTCTCCTCCCCTTTTCTTTTATTTCTCCCA
TCCCTCTCTGAACCTTTCTATCTCTAGTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_h19.b1 MSMg01no431_h19.b1 CHROMAT_FILE:
MSMg01no431_h19.b1 PHD_FILE: MSMg01no431_h19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:49 2005
         (481 letters)



>mm_chr12_91517806_91518686
          Length = 881

 Score =  845 bits (437), Expect = 0.0
 Identities = 467/477 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactgaaatgttgcgtctagaagagaagtaatataactaacaattcttaacttcc 64
           ||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactgaaatgatggggctagaagagaagtaatataactaacaattcttaacttcc 264

                                                                       
Query: 65  caagctttgtgatttttaaatatctatgatttaatgtgaaaaaaaatctagggatgtatg 124
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 265 caagctttgtgatttttaaatatctatgatctaatgtgaaaaaaaatctagggatgtatg 324

                                                                       
Query: 125 tatattgatattgatcaaagataatagtaaacgatggcaaaaaatagttactttctgaac 184
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 325 tatattgatattgatcaaagataatagcaaacgatggcaaaaaatagttactttctgaac 384

                                                                       
Query: 185 ttaaagtattcaaaattttatatctcacttgaggtcataagctagcctgtagtcagtcac 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 385 ttaaagtattcaaaattttatatctcacttgaggtcataagctagcctgtagtcagacac 444

                                                                       
Query: 245 taggatgttgataactaaaaaggaactctgatgtccattatttaaatacagaatgaatgt 304
           ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 445 tagaatgttgataactaaaaaggaactctgatgtctattatttaaatacagaatgaatgt 504

                                                                       
Query: 305 tcttaaggcaggtacataggcctcctctgctgacagccatgagacacttcaatctccaac 364
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcttaaggcaggtacataggcttcctctgctgacagccatgagacacttcaatctccaac 564

                                                                       
Query: 365 tcttactcttgggatagaaatataaaagggaaatgcttaagccacaagcatttgaaggga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcttactcttgggatagaaatataaaagggaaatgcttaagccacaagcatttgaaggga 624

                                                                    
Query: 425 tttaattccgtttagcatggagcagctgctgagatatatggctgttttctgtgggac 481
           |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tttaattccgtttaacatggagcagctgctgagatatatggctgttttctgtgggac 681


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space:   410241
Effective search space used:   410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no431_h19.g1 MSMg01no431_h19.g1 CHROMAT_FILE:
MSMg01no431_h19.g1 PHD_FILE: MSMg01no431_h19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:49 2005
         (251 letters)



>mm_chr12_91683633_91684283
          Length = 651

 Score =  468 bits (242), Expect = e-136
 Identities = 248/250 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actctcctttaagaaatctgcatgccacatgctagatggaaacctcaacctgaagaacac 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 450 actctcctttaagaaatctgcatgccacatgctagatggaaatctcaacctgaagaacac 391

                                                                       
Query: 61  tgaatacagttgaatgaaccaatacatttcattctggaactttgaacacagtttccatac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tgaatacagttgaatgaaccaatacatttcattctggaactttgaacacagtttccatac 331

                                                                       
Query: 121 ttagcctgttaagtgttctgtaggggaaattggaaatctcaggttgatggatggagaggt 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 330 ttagcctgttaagtgttctgtaggggaagttggaaatctcaggttgatggatggagaggt 271

                                                                       
Query: 181 gtactcagaaagttgtccagtctcctttgcctggtaccttggatgcacataagagcaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 gtactcagaaagttgtccagtctcctttgcctggtaccttggatgcacataagagcaaca 211

                     
Query: 241 aagcatcctc 250
           ||||||||||
Sbjct: 210 aagcatcctc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 651
Length adjustment: 9
Effective length of query: 242
Effective length of database: 642
Effective search space:   155364
Effective search space used:   155364
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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