BAC Information

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BAC

Clone NameMSMg01-431J05
Chromosome12 (Build37)
Map Location 6,092,910 - 6,093,408
singlet/doubletsinglet
Overlap genenone
Upstream geneKlhl29, 2810032G03Rik, LOC435292, LOC100042095, LOC672098
Downstream geneLOC100043137, LOC238049, LOC100042118
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431J05.T7 (MSMg01no431_j05.b1)MSMg01-431J05.TJ (MSMg01no431_j05.g1)
ACCAG523802AG523803
length7421,310
length of high quality
(start - end)
503 (42 - 544)---
definitionCHROMAT_FILE: MSMg01no431_j05.b1 PHD_FILE: MSMg01no431_j05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:57 2005CHROMAT_FILE: MSMg01no431_j05.g1 PHD_FILE: MSMg01no431_j05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTAATTATTTGCCTATCTCTTTGAGAGCATTTATTGATAGAATGCTAGG
ATTTTCCTGTTGGGCTGGTTGGTAGCTTCAATATTCTGGACTGTAGTCTC
CACAATAGAAAGCTGTGGAGACCTGGAAACTCAACCAGGATCTTATTCCA
TCTGCCTGTCAGTCTTCACAGTTGAAGTCCACTGACTAGTACTGCAGTAA
CCCCCCTGCCCCTACCCCTGCTGAACAAGATTCCTCATGCTGCTCTCCCT
TGTTTGAGCTCAAATAAAGCTAATCATTGTCTCCTTTGATTCTCATCATC
TTTCTGAATCATCTTACCCTTTCCAATCTCCCTACATACATTCTAAATGA
CCCCCTACATCAAATACATATCACAGGAAAACATGGCTTTCCTTAAATGC
TAGCCAGACAAAATCATTTCTTTTCATAAAGTAATTCTAAGTCTTTCTAT
AGCTAGAAAACCAAGCACAAGCCCCATTCATCTCTAGATCTCAATAACTT
ACATAGTATGTATATTATTTGAAATTTTAAAGGAGGTGATATACTGAAGT
GTTAATGAATATGAACTATTGGAGCGAATTTTAACTGAAAAATGCACATT
GAGATATTTTTCATCCTCTTTTCCCCCCTTTATTCTCTATCCTCTTACTT
TCTTCCTGCCCCTCGTTTATTTTCTTCTTTTTTCTCATCACA
TCTACTAGCGGGGAAAATATAACNNNNNTATANNNTNTNNNNNTNNTTCC
CCCCCCCCCCCCCCCTCTTCTCTCCTCCACTATATNNNNTNNNCCCATCA
CCAACACGGATATATTTTCTCTCCACAACACACCTCTCTTTCTTCTCTTT
GGGGCGTATATTTNAANTATAAACACATATATATACATAATCACAAAATA
AAAACAATATATCACANCNCNNTCTCCCCCTCTTTCCTCTTCTCCTCCCC
TCTCCTNTCTTTCTCTCCTCTTTNTCAACTATNATTAAAAAACAATATAT
AAACATACACATATATACATATTTCTTCCTTTTCTTTCNCTAACTTTCTC
CCCTCTTCATTCTCCAACCTTCTCTCTCCCCTCACCCTCTCTCTCACTTT
TCCTCACTCCTCCTCTCTTTTCCTCTCCTCTTCCTCNCTTTTCTTATCAT
CTACATTAACAATACTATACACACAATACTAAATATCTCTATCACTCAAA
CATATACTTCATACTCTCATTTTCACTCTATCTTTATCACTACTACCACT
CTACTCCCTCCCACTCTATATCTCCCATCCTCACACCCATACTCTCTCCT
TCTATTTCTCTTACTCATTCATTCATTCATCTCCTTCTCTTTTTCTTTTC
TCCTCCTCCTTTCTCCTCTACCTCACCTCCTCCCTTACTCCCTCCTATTC
TCTCTCCTCCCCTACCTCTCATTATTTCTTCACTCACTCTCTCCATTCCA
TACTCTCATTCTCTCTACCACCATACTCATACCCACATTTTTTATTTCTC
TCTAATATACACACATCTACATCTCACATACACTCTATAGGATANTCTCT
TCTTCTCCCACTCTCACCTTCTTATTTTCTTCTTANTCATATTTCTTTTC
TTACCATCCCTCNTCATCTTTACCACTATCTTTCTTCATNCTTACATCTT
TTCTTNCNTCTCTTATTCTCACCCACTTCTACTACTCTCACTTCTTCTCC
TCACACCTCTTCTCTCCACATTTACTATACTCTAATACTTCATATATCTC
CACTAACTCCACCNACTCATATCATTCCCTCATCTTTTCTNTCACATNAC
TAACCTCCATCTCTCTCTCCTCTTACTCTATCTCAACATTTATTAATTAC
CACTACCNTTATCACACGCGTAACGACGCATGANAGGACTCTGTGCTGAT
GATCTGATTTAGCTACTNTTATNCACCTCCATCATATATCTCTCTCTTAT
ATAATACACACACTAACCGCGCGGCGGGTGATATAGCTTTCGATAGATGA
TCTATNTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_j05.b1 MSMg01no431_j05.b1 CHROMAT_FILE:
MSMg01no431_j05.b1 PHD_FILE: MSMg01no431_j05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:57 2005
         (503 letters)



>mm_chr12_6092706_6093608
          Length = 903

 Score =  942 bits (487), Expect = 0.0
 Identities = 496/499 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttaattatttgcctatctctttgagagcatttattgatagaatgctaggatttt 64
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 gaattcttaattatttgtatatctctttgagagcatttattgatagaatgctaggatttt 644

                                                                       
Query: 65  cctgttgggctggttggtagcttcaatattctggactgtagtctccacaatagaaagctg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 cctgttgggctggttggtagcttcaatattctggactgtagtctccacaatagaaagctg 584

                                                                       
Query: 125 tggagacctggaaactcaaccaggatcttattccatctgcctgtcagtcttcacagttga 184
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 583 tggagacctggaaactcaaccaggatctgattccatctgcctgtcagtcttcacagttga 524

                                                                       
Query: 185 agtccactgactagtactgcagtaacccccctgcccctacccctgctgaacaagattcct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 agtccactgactagtactgcagtaacccccctgcccctacccctgctgaacaagattcct 464

                                                                       
Query: 245 catgctgctctcccttgtttgagctcaaataaagctaatcattgtctcctttgattctca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 catgctgctctcccttgtttgagctcaaataaagctaatcattgtctcctttgattctca 404

                                                                       
Query: 305 tcatctttctgaatcatcttaccctttccaatctccctacatacattctaaatgaccccc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 tcatctttctgaatcatcttaccctttccaatctccctacatacattctaaatgaccccc 344

                                                                       
Query: 365 tacatcaaatacatatcacaggaaaacatggctttccttaaatgctagccagacaaaatc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tacatcaaatacatatcacaggaaaacatggctttccttaaatgctagccagacaaaatc 284

                                                                       
Query: 425 atttcttttcataaagtaattctaagtctttctatagctagaaaaccaagcacaagcccc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 atttcttttcataaagtaattctaagtctttctatagctagaaaaccaagcacaagcccc 224

                              
Query: 485 attcatctctagatctcaa 503
           |||||||||||||||||||
Sbjct: 223 attcatctctagatctcaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space:   440249
Effective search space used:   440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)