BAC Information

Click to search

BAC

Clone NameMSMg01-431L03
Chromosome12 (Build37)
Map Location 115,729,547 - 115,730,065
singlet/doubletsinglet
Overlap geneIgh
Upstream gene4930523C11Rik, Ighd3-1, Ighd5-1, Adam6, Ighv5-1, Ighv2-1, Ighv5-2, Ighv2-2, Ighv5-3, Ighv5-4, Ighv6-1, Ighv2-3, Ighv5-5, Ighv5-6, Ankrd12-like, Ighv5-7, EG668389, Ighv5-8, Ighv5-9, Ighv5-10, Ighv2-5, Ighv5-11, Ighv5-12, Ighv2-6, Ighv5-9-1, EG628098, Ighv2-9-1, Ighv5-13, Ighv2-6-8, EG629785, Ighv2-7, LOC668405, Ighv5-15, Ighv5-16, Ighv5-17, Ighv5-18, Ighv2-8, Ighv2-9, Ighv5-19, Ighv7-1, Ighv7-2, Ighv14-1, Ighv4-1, Ighv3-1, Ighv11-1, Ighv14-2, Ighv4-2, Ighv3-2, Ighv11-2, Ighv14-3, EG629812, Ighv6-2, Ighv9-1, Ighv12-1, EG629818, Ighv12-2, Ighv9-3, Ighv7-3, Ighv15-1, Ighv14-4, EG668438, Ighv7-4, EG629833, EG633457, Ighv13-1, Ighv3-6, EG636260, Ighv3-7, Ighv5-21, Ighv3-8, Ighv8-1, Ighv1-1, Ighv13-2, EG435321, Ighv6-3, EG628398, EG639510, Ighv6-6, EG432701, EG629849, Ighv1-2, Ighv10-1, Ighv1-3, Ighv1-4
Downstream geneIghv10-2, EG668469, EG380809, Ighv1-6, EG668474, Ighv10-4, Ighv1-8, Ighv15-2, Ighv1-9, Ighv1-10, Ighv1-11, EG629860, Ighv1-13, Ighv1-14, Ighv1-15, EG629866, Ighv1-17-1, Ighv1-17, Ighv1-18, EG668493, Ighv1-19, EG668497, Ighv1-21-1, Ighv1-21, Ighv1-22, Ighv1-23, Ighv1-24, Ighv1-25, Ighv1-26, Ighv1-27, Ighv1-28, Ighv1-29, Ighv1-30, Ighv1-31, Ighv1-32, Ighv1-33, Ighv1-34, EG668515, Ighv1-36, Ighv1-37, Ighv1-38, Ighv1-39, Ighv1-40, Ighv1-41, EG629906, EG629908, Ighv1-44, Ighv1-45, Ighv1-46, Ighv1-47, Ighv8-3, EG629919, Ighv1-48, Ighv1-49, EG640506, Ighv1-50, Ighv1-51, Ighv1-52, Ighv1-53, EG629930, EG668534, EG211331, Ighv1-55, EG634662, Ighv1-56, EG629936, Ighv8-7, Ighv1-57, Ighv8-8, Ighv1-58, EG432708, Ighv1-60, Ighv1-61, Ighv1-62, EG668544, EG238448, EG668549, EG432709, EG668552
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431L03.T7 (MSMg01no431_l03.b1)MSMg01-431L03.TJ (MSMg01no431_l03.g1)
ACCAG523894AG523895
length826739
length of high quality
(start - end)		---517 (70 - 586)
definitionCHROMAT_FILE: MSMg01no431_l03.b1 PHD_FILE: MSMg01no431_l03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:07 2005CHROMAT_FILE: MSMg01no431_l03.g1 PHD_FILE: MSMg01no431_l03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:07 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
AATTACTGTATTACCAACAAATACACACCCCTCTCTCTATAAGAACGTGG
CGTGTTTCTATCTTCTCGCCCGCCACCCTCGCGTTCGCTACTAGCCTAAA
TATGCATATGACGCAATAGTGTTTGAATGGTCGGCCTTGTATAGTGAATG
TTTGAGGAAGACAGAACACGATTTGACCCAATTTAGTCTCATATATCAAG
TACATGCTTTTCTCACTCGTTCTTCGTTTCCCTCTTAGCAGTACTCTAAG
TATTGTTGTACGATATTCATAACACATATACTTACTTTTATCCTACACTC
ATACATCAAAGTACCTTATCTTAATTCATACTTAATCTAGCAACTCATCC
GATCTGTATACGCTTGAAAGTTTGTTTAGGGCGCCCTTACAGAAAAACAA
GATTGTTTGCCCAGTGTTATGCGGCACAAAGCTGTGTGGTCATGCCCGGG
CGGTGGCGCGAATAGGGCGCTTACGCGGTTGAGGCTTCGTTTTGTGCTTT
CGTACCGTATCTATCTAATTAATATATTATCTGCACGCGATCACCTACTT
ATTTAGGCAGCGACTATTTATCCCTCTTTAATATAAAAACCANNNNNGGG
GTTGTTCTCCGCCGCAACACCCCCTTCCTCNTTAAAANTTNACTGGTNCG
TCTGTCCNTGGNGAANGCGNNNANNTGCTNANNTNNAANNNTTNNNCNAN
NCCGCTANTNNTTCTTGTNNNNNNANNNNNNCTTCNNACCNNGNNGAGNG
TAGCNGGACCTNNNCACGCCGACGTTTGAATGGNTTCCAANTCCNNTAAN
GCTTNNGCCTCNCCCACTCCGCAAGC

GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTGGGGCATGCATATATACTTGTCAACAGAA
AAAAAAAGAAAATACAGACTCTTAGAGGCTTCTTGTTTTTTGTTTTAGTC
TTTTCAGTCCCTATGAGTTCATGTTAATTGATATTGTGTGTTTTCTTGTG
GTATCCTTGGCTTATTGACTCCAGCAATGTTTCCTTCCAGTATTTTATAC
CCACTGATTTTTGTTGAATTATTTTATTCCTTGCCAATCATGTATGCTTC
TATCATAGTTCTGTGATCTTTCCATCTTCTGCCTCCAGGCCTCCTATGCA
GTGTCAGAGGTGGAGTCCCTTCTATGACATGGGTCTCCGTTTATACCATT
CATTTATTGGGGACTCTCATGATTTTTCCCCCATCTTTACCACAGGACTA
TTGCAAGCAGGACAAATTGTATGTTGATGGGTGTGTCAATGAGTTGGTGT
CCTCATCCGTCCATTGCAAGTCTTGTCTGGTTACAGAAGATGGCCAGTTC
AAACTCATATCCCATTTACTAGGGGTTTTAGCTAGGGTCACATTTTTAGG
AGTTTCATTTGNCTTAAGTTTGCCCCCAGAAATTCTCCTCAATTCAAGTT
TTCTCTTTCAGTAATTTCTATCTTCATTCCCCAAATGGCTGGTTCTCCCT
ATTACCATCTCCAATGGCAATATTGGCTCTATTTCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_l03.g1 MSMg01no431_l03.g1 CHROMAT_FILE:
MSMg01no431_l03.g1 PHD_FILE: MSMg01no431_l03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:07 2005
         (517 letters)



>mm_chr12_115729347_115730265
          Length = 919

 Score =  870 bits (450), Expect = 0.0
 Identities = 502/520 (96%), Gaps = 4/520 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctggggcatgcatatatacttgtcaacagaaaaaaaaag--aaaatacagactcttagag 58
           ||||| |||||||||||||||||||||||||||||||||  |||| ||||||||||| ||
Sbjct: 201 ctgggacatgcatatatacttgtcaacagaaaaaaaaagaaaaaaaacagactcttatag 260

                                                                       
Query: 59  gcttcttgttttttgttttagtcttttcagtccctatgagttcatgttaattgatattgt 118
           ||||||||||||||||||||||||||||||||| ||||| || |||||| ||||||||||
Sbjct: 261 gcttcttgttttttgttttagtcttttcagtccgtatgactttatgttagttgatattgt 320

                                                                       
Query: 119 gtgttttcttgtggtatccttggcttattgactccagcaatgtttccttccagtatttta 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgttttcttgtggtatccttggcttattgactccagcaatgtttccttccagtatttta 380

                                                                       
Query: 179 tacccactgatttttgttgaattattttattccttgccaatcatgtatgcttctatcata 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacccactgatttttgttgaattattttattccttgccaatcatgtatgcttctatcata 440

                                                                       
Query: 239 gttctgtgatctttccatcttctgcctccaggcctcctatgcagtgtcagaggtggagtc 298
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 441 gttctgtgatctttccatcttctgcctccaggcctcctatgccgtgtcagaggtggagtc 500

                                                                       
Query: 299 ccttctatgacatgggtctccgtttataccattcatttattggggactctcatgattttt 358
           ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| 
Sbjct: 501 ccttccatgacatgggtctccgtttagaccattcatttattggggactctcatgatttt- 559

                                                                       
Query: 359 ccc-ccatctttaccacaggactattgcaagcaggacaaattgtatgttgatgggtgtgt 417
           ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 560 ccctccatctttaccacaggacttttgcaagcaggacaaattgtatgttgatgggtgtgt 619

                                                                       
Query: 418 caatgagttggtgtcctcatccgtccattgcaagtcttgtctggttacagaagatggcca 477
            |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aaatgagttggtgtcctcatctgtccattgcaagtcttgtctggttacagaagatggcca 679

                                                   
Query: 478 gttcaaactcatatcccatttactaggggttttagctagg 517
           |||||||||||||||||||||||||||||| |||||||||
Sbjct: 680 gttcaaactcatatcccatttactaggggtcttagctagg 719


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 919
Length adjustment: 10
Effective length of query: 507
Effective length of database: 909
Effective search space:   460863
Effective search space used:   460863
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |