XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAC
TGTCTCTCGTGTGAATTGGAAAGAGTCAATCATGTATGAAGAATCTTCAT
TTAAAATAGAGTTCCAAGAAAGATAATGACTAAATCTGACAATAGCTTTT
AATAACCTATGATCAGCCATTTTTCAATCTCTGTGAGTTTTAAACTACTT
CATCTTGCCTTTTAGTTCCTAGTGATGTTTTGTATTTTTGTATCGTTCTT
ATGGAGCTATTCAAAATTGCTTCTTAAATATTTTCATTGAAACTTCACAA
ATTCAGTATGTTTGACTACATAATAGCATTCTTGAGTGCTATAATTCTTC
ATTGATTTTATCATAATTTATGGGTGTCTTTCCTATTAATTGACTGTTGG
GACATTCAAAACTTAGCTGTGATAAACCAAGCTACTGTGAATATATGATA
TTCAGCTTTAATAAAATGTTTTCTATGATATTCGGCTTTAATAAAATGTT
TTCTCTAANAAGTGATTCATAAGATTTGTTGTTAATGAAATGTTCAGATC
ANNACTAAATACTACATATTTTCAGTGACCCTAAGTTTCAAAAGGAACCT
ATGGCTATCTGTTTGTGGCCCAATAGACCAACCTTCCTTAACCGAACCTT
GGGGACTTTTGCTTAACCCTGGGACGTAGAACGACCAATTTTGAAAAATT
CTAAAATTTGCGCCTTGCCTCCTTGAGAATGCCAAAAAAAGTCCCCGGAG
GAAATTATT

GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCACCTGAGAAATACCGAATGGCAGAGAAGCAC
CTGAAAAAATGTTCAACATCGTTGATCATCAGGGAAATGCAAATCAAAAC
AACTCTGAGATTCCACCTCACACCAGTCAGAATGTCTAAGATCAAAAATT
CAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTC
CATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTG
GCGGTTCCTCAGAATATTGGACATAGTGCTACTGGAGGATCCTGCAGTAC
CTCTTCTGGGCATATATCCAGAAGATGTTCCAACTGGTTAGAAGGACACA
TGCTCCACTATGTTCATAGCAGATTTGTTTATAATAGCCAGAATCTGGAA
AGAACCTAGATGCCCCTCAACAGAGGAATTACATACAGAAAATGTGGTAC
ATTTACACAATGGAGTACTACTCAGCTATTTAAAAGAATCAATTTTATGA
AATCCTAAGGNAAGGGATGGACCTGCAGGCCATAATCATGAGTGAGAGGA
ACCAATTCTCAAGGAACTTCTATAAAATGTATCCCTGATAATTGGAATTT
TCCCCCTAACTTTTAATACCCCGAATTTTTAAATACATTGGTTAATCCCT
GTTATTGGAAAAAACAAAAAACACAGGGGGCCCTTTGCCCCTCTTTCAAT
AGGAAN

Query= MSMg01no431_o12.b1 MSMg01no431_o12.b1 CHROMAT_FILE:
MSMg01no431_o12.b1 PHD_FILE: MSMg01no431_o12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:25 2005
         (482 letters)



>mm_chr12_6704385_6705268
          Length = 884

 Score =  888 bits (459), Expect = 0.0
 Identities = 474/480 (98%), Gaps = 2/480 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaactgtctctcgtgtgaattggaaagagtcaatcatgtatgaagaatcttcatt 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaactgtctctagtgtgaattggaaagagtcaatcatgtatgaagaatcttcatt 264

                                                                       
Query: 65  taaaatagagttccaagaaagataatgactaaatctgacaatagcttttaataacctatg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taaaatagagttccaagaaagataatgactaaatctgacaatagcttttaataacctatg 324

                                                                       
Query: 125 atcagccatttttcaatctctgtgagttttaaactacttcatcttgccttttagttccta 184
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 325 atcagccatttttcaatctctgtgagttttaaactatttcatcttgccttttagttccta 384

                                                                       
Query: 185 gtgatgttttgtatttttgtatcgttcttatggagctattcaaaattgcttcttaaatat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtgatgttttgtatttttgtatcgttcttatggagctattcaaaattgcttcttaaatat 444

                                                                       
Query: 245 tttcattgaaactt--cacaaattcagtatgtttgactacataatagcattcttgagtgc 302
           ||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 445 tttcattgaaacttttcacaaattcagtatgtttgactacacaatagcattcttgagtgc 504

                                                                       
Query: 303 tataattcttcattgattttatcataatttatgggtgtctttcctattaattgactgttg 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tataattcttcattgattttatcataatttatgggtgtctttcctattaattgactgttg 564

                                                                       
Query: 363 ggacattcaaaacttagctgtgataaaccaagctactgtgaatatatgatattcagcttt 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggacattcaaaacttagctgtgataaaccaagctactgtgaatatatgatattcagcttt 624

                                                                       
Query: 423 aataaaatgttttctatgatattcggctttaataaaatgttttctctaanaagtgattca 482
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 625 aataaaatgttttctatgatattcggctttaataaaatgttttctctaaaaagtgattca 684


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 884
Length adjustment: 10
Effective length of query: 472
Effective length of database: 874
Effective search space:   412528
Effective search space used:   412528
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)