BAC Information

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BAC

Clone NameMSMg01-431P19
Chromosome12 (Build37)
Map Location 65,735,789 - 65,736,202
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC435302, EG623046
Downstream geneLOC623123, LOC217645, LOC217647, Gm527, Klhl28, A430041B07Rik, Prpf39, Fkbp3, Fancm, C79407, Wdr20b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431P19.T7 (MSMg01no431_p19.b1)MSMg01-431P19.TJ (MSMg01no431_p19.g1)
ACCAG524116AG524117
length786780
length of high quality
(start - end)		495 (33 - 527)469 (60 - 528)
definitionCHROMAT_FILE: MSMg01no431_p19.b1 PHD_FILE: MSMg01no431_p19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:32 2005CHROMAT_FILE: MSMg01no431_p19.g1 PHD_FILE: MSMg01no431_p19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGCCGCTATACGACTCCTATAGGTTCGAGGATCCGCGGAATTCACTACAT
CTATGCCTATCTGCATAGGACCTGAACAAGATTTGGCCCTCAATGTGAGC
TGAAAGGGGTATTTCAGATTCAAACTACTATTGGCTCTAATCTGAGAGCC
CTTGTTCTTGGGAGAGGAAAGAAGAGAGTGGGGACATAGCTCAGTCAATA
AAACGTTTCCTGCCAAAGCCTGAACACCCGTGCTTGATCCCAAAGCTCAG
GTATAAAACCCGAGGTGGTAGCTAGTATTTGTATTTCCAGGCTGGGGGAA
GCTGAGACAAGTGTCCAGGTAGCCTAGACGAATGCATCCTAAGCCTACTT
ATGTAAGGTAGGCACATCAGTTTAATTGTGAATATGCTAGTTTTACTGTT
TGGGATAAGAATATAAAGCCCTCTTGGGAATTTTATAGATCACATGTGCT
ATAGATATGTTTTCTTTATTTCTCATATATAAGTTTTTTTTGAGAAAAAT
ACATTAAATTANAATAATATGTCTCCAAAATAATTAAGTGAGGAGTGGTG
CTATATGAAAATAGAAAAGAAATTTGTGGGGAAACGAAATTTCCCAGCCA
TTGTCTTCTCTTGGTAGCAGAATTCCCGCTGGGGGAGACTTCCGGGGTAA
TCCCCGATTCGTTTGGTTGGAGGGGACTATTTTTAACCCCCCTAATTTTT
TTTCAACCCGGGGTAAGCCTCAACCCCCCCTATTTTAAGCCGTTTTTTTG
TGCGACCCCTGTCTTTTTTTGGAAAAAGTACCGGCG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCG
GAGGATCCCGCAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAAC
CGGTATTAAGGACACATGCTCCACTATGTTCATAGCAGCTTTATTTATAA
TAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATA
CAAAAAATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTTAAAA
AAATGAATTTGTGAAATTCCTAGGCATATGGTTGGACCTGGAGGGCATCA
TCCTGAGAGAGGTAACACAATCACAAAAGAACTCAAATGATATGTACTCA
CTGATAAGTGGATATTAGCCCAGAAACTTAGTATAGCAAGATATAAGATA
CAATTTGCAAAACACATGAAACTGAAGAAGAACAAAGGCCAAAGTATGGA
CACTTTGCTCCTTCTTAGAATTGAAGACAATCACCCATGGAAGGAATTAC
AGAGACAAAGTTTGGAGCTGAGACAAAAGGATGGACCATCTAGAGACTGC
CCTATCCAGGGATCCATCTCATAATTAGCCTCCCAAGATGAAACCCATGC
TTACACTAACAAGCTTTTGTTGCAAGGACCCTGGTTGGAGCCTACCAAAA
CAAAAAAGGGAGGTCCCCGCCCCCTATTGGGAGGGGATCACAGGCCCCCC
CCCGGGAAAACTAAAAAAAGATTCCCGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_p19.b1 MSMg01no431_p19.b1 CHROMAT_FILE:
MSMg01no431_p19.b1 PHD_FILE: MSMg01no431_p19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:32 2005
         (495 letters)



>mm_chr12_65735308_65736202
          Length = 895

 Score =  787 bits (407), Expect = 0.0
 Identities = 412/414 (99%)
 Strand = Plus / Minus

                                                                       
Query: 82  tcagattcaaactactattggctctaatctgagagcccttgttcttgggagaggaaagaa 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895 tcagattcaaactactattggctctaatctgagagcccttgttcttgggagaggaaagaa 836

                                                                       
Query: 142 gagagtggggacatagctcagtcaataaaacgtttcctgccaaagcctgaacacccgtgc 201
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 835 gagagtggggacatagctcagtcaataaaaggtttcctgccaaagcctgaacacccgtgc 776

                                                                       
Query: 202 ttgatcccaaagctcaggtataaaacccgaggtggtagctagtatttgtatttccaggct 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 ttgatcccaaagctcaggtataaaacccgaggtggtagctagtatttgtatttccaggct 716

                                                                       
Query: 262 gggggaagctgagacaagtgtccaggtagcctagacgaatgcatcctaagcctacttatg 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 gggggaagctgagacaagtgtccaggtagcctagacgaatgcatcctaagcctacttatg 656

                                                                       
Query: 322 taaggtaggcacatcagtttaattgtgaatatgctagttttactgtttgggataagaata 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 taaggtaggcacatcagtttaattgtgaatatgctagttttactgtttgggataagaata 596

                                                                       
Query: 382 taaagccctcttgggaattttatagatcacatgtgctatagatatgttttctttatttct 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 taaagccctcttgggaattttatagatcacatgtgctatagatatgttttctttatttct 536

                                                                 
Query: 442 catatataagttttttttgagaaaaatacattaaattanaataatatgtctcca 495
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 535 catatataagttttttttgagaaaaatacattaaattaaaataatatgtctcca 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space:   429225
Effective search space used:   429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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