ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCCGTGGTTAATTATTAGTGATAGGACACATTTTTCCTCATTACTCAT
AAATACCACCACTACTACTACTACTACTACTACTACTACTACTACTAATA
ATAATAATAATAATAATAATAGTGATATAGTCCATCAAAGTCGTGTATAC
TTGGGACATTATGTTACTGGTATCCATTTGGAATGTATCAGTTACCAGGA
ATAAAAAATGAATTAATAAAAGAAGTTGGAATGTAGGCAGAGTCTCTGGC
AAGTTAGTCCATAAATGTCTTAATTTAACCTAACAGAATACCAGGTTTTG
CATGTGTCTGTTCATTAGGGTTTGGAAGACAACTATAGATCATTGTGAAG
GGAAAACGAGAAATATCAGCAGTTTCCGGTTTTCTGAAAACAAAACTCAA
GTAATATCAAACTTGGGGACAACAGAAGGTATTTGCAAGGGAAGAGACCC
TTCAACCTATAATTTAGTAAATAGAGGAAAGCCACTCTTTTCCTATGGGA
TCAAAGCAAAAAACAGACATTTTATGACTTTTACANAAAATGATAACTTA
TAGTGTGCCTCAAACAAATGAATTACCACTGAAATAATAGCCCTTGGCCT
ACCCCCTTCCAAAACCCCCTTGAGTGAGGAACCACTAAAATTTCCCCCAA
ATTTTTTAGAACCCTTTATTTTTTTTTATAGACCTTTTAAAAAAGGTACT
TTTCTAGTTTCGCGGGATTCA

ATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTAGAGTAATTTCCAGTGCAGGCTGCC
ACAGTTTGCATTTCAATGAGCAGTGAATGAGGAAGACTCCATTTAGACCC
ATGGCTCTATTTTTAAATATGGTCATTGGTTTTCTTGACTGTTTCCTTTT
TGAATTCTTTGTATATTCCAGATATTAATCCTTAAATGAACATATAGTTG
ACAACAACTGTCTCCCCTTCTGGAGACATCCTCTCTACTGTATGGTTTCC
ATTACTGTGCAGAAGCTTGTTGGTTTTTTGTTTGTTTTTTTTTTTTCTTT
TTTATTAGGTATTTTCTTTATTTACATTTCAAATTTTATCCCCTTTCCCC
ATTTTCTCTTCGAAAATCTCCCCATTTCATTCCCCTCCGCCTGCTCACTA
ACTTACCCACTCTGACTCCCCTATCTTGGGATTCCCCTATCCTGGGGCAT
CAAACCTTCATAAGACCAAGGGGCTCTCCTCTTCTTGATGACCCACAAGG
GAGTACTTTGCTTCACTTGAGGATGGAGGCTTGAGGCCTTTCCTTGGGGA
CCCCTTGGTTGAAAGATTAAACTCCGGGAAGTCTGGGGGGACTGGGTTAT
TCCTATTGGGGTCCCCAAAGGGGAGGCGACACCCCTCTCCTCCCGGGGGC
TTTTCTTATCCCTTTTTTATCGGAATATTTGGCTCCTTTGAGTCAAATCT
GGAACTTTGTTACTTTGCAAA

Query= MSMg01no432_b20.b1 MSMg01no432_b20.b1 CHROMAT_FILE:
MSMg01no432_b20.b1 PHD_FILE: MSMg01no432_b20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:42 2005
         (476 letters)



>mm_chr12_95054424_95055299
          Length = 876

 Score =  777 bits (402), Expect = 0.0
 Identities = 448/472 (94%), Gaps = 15/472 (3%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctccgtggttaattattagtgataggacacatttttcctcattactcataaatac 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 792 gaattctccgtggctaattattagtgataggacacatttttcctcattactcataaat-- 735

                                                                       
Query: 65  caccactactactactactactactactactactactactaataataataataataataa 124
               |||||||||||||||||||||||||||||||||||         || || || || 
Sbjct: 734 ----actactactactactactactactactactactac---------tagtagtagtag 688

                                                                       
Query: 125 taatagtgatatagtccatcaaagtcgtgtatacttgggacattatgttactggtatcca 184
           || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 687 tagtagtgatatagtccatcaaggtcgtgtatacttgggacattatgttactggtatcca 628

                                                                       
Query: 185 tttggaatgtatcagttaccaggaataaaaaatgaattaataaaagaagttggaatgtag 244
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 tttgggatgtatcagttaccaggaataaaaaatgaattaataaaagaagttggaatgtag 568

                                                                       
Query: 245 gcagagtctctggcaagttagtccataaatgtcttaatttaacctaacagaataccaggt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 567 gcagagtctctggcaagttagtccataaatgtcttaatttaacctaacagaattccaggt 508

                                                                       
Query: 305 tttgcatgtgtctgttcattagggtttggaagacaactatagatcattgtgaagggaaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tttgcatgtgtctgttcattagggtttggaagacaactatagatcattgtgaagggaaaa 448

                                                                       
Query: 365 cgagaaatatcagcagtttccggttttctgaaaacaaaactcaagtaatatcaaacttgg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 cgagaaatatcagcagtttccggttttctgaaaacaaaactcaagtaatatcaaacttgg 388

                                                               
Query: 425 ggacaacagaaggtatttgcaagggaagagacccttcaacctataatttagt 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ggacaacagaaggtatttgcaagggaagagacccttcaacctataatttagt 336


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 9
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space:   403556
Effective search space used:   403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)