BAC Information

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BAC

Clone NameMSMg01-432E04
Chromosome12 (Build37)
Map Location 87,624,934 - 87,625,217
singlet/doubletsinglet
Overlap gene1700020O03Rik
Upstream gene2810002I04Rik, Nek9, Tmed10, LOC100042549, LOC667119, Fos, EG667124, Jundm2, LOC100042073, Batf, BC011209, 0610007P14Rik, Ttll5, Tgfb3, 1700019E19Rik
Downstream geneLOC100042112, Esrrb, LOC667191, Vash1, Angel1, EG627607, LOC100042650, 6430527G18Rik, 2310044G17Rik, Zdhhc22, Tmem63c, Ngb, Pomt2, Gstz1, EG625237, Tmed8, Gm263, 4933437F05Rik, AI413782, Ahsa1, Thsd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-432E04.T7 (MSMg01no432_e04.b1)MSMg01-432E04.TJ (MSMg01no432_e04.g1)
ACCAG524322AG524323
length851863
length of high quality
(start - end)
284 (68 - 351)158 (73 - 230)
definitionCHROMAT_FILE: MSMg01no432_e04.b1 PHD_FILE: MSMg01no432_e04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:55 2005CHROMAT_FILE: MSMg01no432_e04.g1 PHD_FILE: MSMg01no432_e04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGAATCCGCGGAATTCAT
CACAGGTGACCGGTAGAGTGTTGGCAGAGATCTGAGCTATTTATTCTTTT
AGGAAAATCCTATAAAGAATGACACAAGGAAGCCTCTATCTGCAGTCTTG
TTCATCACACGGGTGAAGAGCTGATAACAGATGTATGCAGCTGTGTGATT
TAGTGCCAGGAGCTGGCCCCTGATGTGTATTAATACAGCGGCAAAGCGGG
ACGCGCCTCTCTTCATCACTCATTTCTATAAAAGAGGTGGGATCCGAGAT
GGCCCGATGCTAGGCAGAGCATGCCCATTTGTTCTCCTGACTGATGGCGC
ATGCTCACGCTGTGTCCTTCACCTCTATGTCGCATTCATTGTTGTTAGGA
GAACTAAAACACCTATTGACCTTGTTTCCTTGACTCCCTTTTCTCTTCAA
CAAATTATGCGCATTCTCCCCTCCCGAGTATCCTCACCTCCCTGTTACTT
CCTCCTCATTCTTTGCCCTCTTCTTCTTCTTTCCCTTCCCCTCATTGTCT
TCTTCCTCTTCTTTCCCTTTTGTCCCTACTGCCCCTTTTATCTCCACCTT
TTTCCCCTCTTATTTCTCTCTCTTTTCTTCTTTTATTTCTCTCTTCCTCT
CTCTCTTCTTCCCTTTTATTCTCTTTTTGCTCATCTCCCGTTCTACGTCG
TTCTCTTCCCCTATTTCCCTCTTTCCTCCTTCCTCTTTTTTTCCCTTTTT
CCCCTTCCTTTTTTCCTTCTACCCTGTTTCTCTTCCTCTTTCTCTATTCT
CTTCCTTTATCTCCTTTTTCTACTTTTCCCCTCATTATTCATCCCTTTTT
G
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTAGACCAAGTTTTTTTCTCTTCTTCTAA
TTTCCACAGAATTGAAAGGCTTAGGGGCACAATTCTCCTAATCCCAACAA
CTTGGGAGGCAAAGATAGGAAAATCAATGCACTTATGAAGCTAGCCTGAT
CTATGCAGTGAGTTTTAGGGTAGTCGGGGCTATGTAGGGAGGTCCCCGCC
TCAAAGCAAGCGTGCTGTTGCTTTGGTTGTACGGGGCGTTGGACGTTTTA
TACGCTTCGTCTGGCCGTTTTTTTTTTCGGTACGTTTGCATTCTGTTTCT
TTCGCGTTCCTCTGCTCTCTCTTTCCCTCTGTTTGTGAGTTTTGCTCTCG
CTGTTTTAGGGAGTTATTTGCCCTTTTCCCCTAGTTTTCTTCTACCTTTT
CTGCCTCTTTTCTTTTTCTGCTTTCCTTTCATCTTCTATACCTATAATTC
TTATTCTTTTCTCTCCTTCCTTCTATTTTCTCTCCCTTTTTTTTTTTTTC
CTCCTACCCTTATTCATCTTTCCCTTCCATATTTACTTTCTACACTCCTT
TTCAATCGTTCTTCCTTTTCTATCTTCTACACATCTGCTCTCTCTCATTC
TTCCTCCCTTTTTGTATCTTTCCCGACCTTCCTCCCCACCCGCCATCCCC
TTCCACTCTCTTATCCCGCTATCTATACATCTCCTTCAACTCGATTATAC
TCCGCATATTGTCTCTCTCTTCGTCGTGTAATTTCTTCCCTTCCCTCTTG
TTTTCTCTGTCTTGTATCTCCTTTCCTTCATACCATTTTAGTTCCCTTGC
ATCCATTCACTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no432_e04.b1 MSMg01no432_e04.b1 CHROMAT_FILE:
MSMg01no432_e04.b1 PHD_FILE: MSMg01no432_e04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:55 2005
         (284 letters)



>mm_chr12_87624734_87625417
          Length = 684

 Score =  542 bits (280), Expect = e-158
 Identities = 283/284 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtgttggcagagatctgagctatttattcttttaggaaaatcctataaagaatgacacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 gtgttggcagagatctgagctatttattcttttaggaaaatcctataaagaatgacacaa 425

                                                                       
Query: 61  ggaagcctctatctgcagtcttgttcatcacacgggtgaagagctgataacagatgtatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 ggaagcctctatctgcagtcttgttcatcacacgggtgaagagctgataacagatgtatg 365

                                                                       
Query: 121 cagctgtgtgatttagtgccaggagctggcccctgatgtgtattaatacagcggcaaagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 cagctgtgtgatttagtgccaggagctggcccctgatgtgtattaatacagcggcaaagc 305

                                                                       
Query: 181 gggacgcgcctctcttcatcactcatttctataaaagaggtgggatccgagatggcccga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gggacgcgcctctcttcatcactcatttctataaaagaggtgggatccgagatggcccga 245

                                                       
Query: 241 tgctaggcagagcatgcccatttgttctcctgactgatggcgca 284
           |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 244 tgctaggcagagcaagcccatttgttctcctgactgatggcgca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)