Query= MSMg01no432_e15.b1 MSMg01no432_e15.b1 CHROMAT_FILE:
MSMg01no432_e15.b1 PHD_FILE: MSMg01no432_e15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:57 2005
(473 letters)
>mm_chr12_41517875_41518747
Length = 873
Score = 812 bits (420), Expect = 0.0
Identities = 457/474 (96%), Gaps = 9/474 (1%)
Strand = Plus / Plus
Query: 1 tccaacataataaattgcctttgaagaaatgctttcgtttcggttcctagtccttggtta 60
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 201 tccaacataataaattgcctttgaaaaaatgctttcgtttcagttcctagtccttggtta 260
Query: 61 gaacaaagagctaaaatacaaaagcattctgtggaatgaaccccttgagatttatgatta 120
||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||
Sbjct: 261 gaacaaagagctaaaatacaaaagcattcggtggaatgaaacccttgagatttgtgatta 320
Query: 121 attatttataatgaattcataagattaataaatgcatgctctgtttctttaatgcctctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attatttataatgaattcataagattaataaatgcatgctctgtttctttaatgcctctt 380
Query: 181 atctacattagtaaggggctgataatttgcagtttggattgcttttatataaatatgact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atctacattagtaaggggctgataatttgcagtttggattgcttttatataaatatgact 440
Query: 241 gtgaaatataagatgtacgttgacactagaatcaaagtaataattaaacctctataatta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgaaatataagatgtacgttgacactagaatcaaagtaataattaaacctctataatta 500
Query: 301 ttttatattttaagggaccagatttgttcaatggaaaattttattcttttgtttactttt 360
||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 501 ttttatattttaagggaccagatttgttcaatgga--------ttcttttgtttactttt 552
Query: 361 aacatattactagaatattaaaaaa-tcataataataaaaataaagtttaaaagggctat 419
||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 553 aacatattactagaacataaaaaaaatcataataataaaaataaagtttaaaagggctat 612
Query: 420 aaatatttttctttaatgcttttatagtcagtatattagtaataaagcacattc 473
||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 613 aaatatttttctttaatgcttttatagtcagcatattagtaataaagcacattc 666
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space: 399569
Effective search space used: 399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no432_e15.g1 MSMg01no432_e15.g1 CHROMAT_FILE:
MSMg01no432_e15.g1 PHD_FILE: MSMg01no432_e15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:57 2005
(513 letters)
>mm_chr12_41725143_41726055
Length = 913
Score = 810 bits (419), Expect = 0.0
Identities = 449/459 (97%), Gaps = 1/459 (0%)
Strand = Plus / Minus
Query: 55 tataaagtacttatgtggctcttattattcataactttaggcttctgaataattcacatc 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 913 tataaagtacttatgtggctcttattattcataactttaggcttctgaataattcacatc 854
Query: 115 ctggcatgatggtacatgccattaatcccatcacttgggaggcaggaacagaaggatctc 174
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 853 ctagcatgatggtacatgccattaatcccatcacttgggaggcaggaacagaagaatctc 794
Query: 175 tgtgagttcaaggccaacttggtcaacatagtgacttacaggacagccagagctacatca 234
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 793 tgtgagttcaaggccaacttggtcaacatagtgacttacagaacagccagagctacatca 734
Query: 235 tgagacactgtttcaaaaaaattttttaaagagagagagaataaattattaatctacaat 294
|||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 733 tgagacactgtttc-aaaaaatttttaaaagagagaaagaataaattattaatctacaat 675
Query: 295 ttaaatctaatcttaaagacaacataataaaccaacaatggtaaaatacatagcccaata 354
|||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||
Sbjct: 674 ttaaatctaatcttaaagacaatataataaaccaacaatggtaaattacacagcccaata 615
Query: 355 cttactatataacataccaatacactaattatgctaattagaataaggtacaagtagttg 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 cttactatataacataccaatacactaattatgctaattagaataaggtacaagtagttg 555
Query: 415 tgatacaaatcacctacattgccttggggaacatgctacatatcagtacaaacacagtac 474
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 554 tgatacaaatcacctacattgccttggggaacatactacatatcagtacaaacacagtac 495
Query: 475 ttgagatatctgatatgatattctttttatttgctggtg 513
|||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ttgagatatctgatatgatattctttttatttgctggtg 456
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space: 454209
Effective search space used: 454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
