BAC Information

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BAC

Clone NameMSMg01-433I09
Chromosome12 (Build37)
Map Location 35,150,286 - 35,150,526
singlet/doubletsinglet
Overlap geneHdac9
Upstream geneLOC668801, LOC668806, Ferd3l, Twist1
Downstream gene4921508M14Rik, Prps1l1, Snx13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433I09.T7 (MSMg01no433_i09.b1)MSMg01-433I09.TJ (MSMg01no433_i09.g1)
ACCAG525286AG525287
length706783
length of high quality
(start - end)
240 (63 - 302)259 (70 - 328)
definitionCHROMAT_FILE: MSMg01no433_i09.b1 PHD_FILE: MSMg01no433_i09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:38 2005CHROMAT_FILE: MSMg01no433_i09.g1 PHD_FILE: MSMg01no433_i09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTTGCGGCGCTATACGAATACTTTTTCAAGAGGATCCGNGGAATTCTGT
TTTTCATAGATCTATTGTGNTTGCATTTTTTTTATTATTATTTTGTTTGC
ATTTCTTTGAACTCTTTGGGGTCCTTGACATTTTGTTCTTTACTTTTTAG
TAAGACATACTTATGTTCCATGCCTAGTATCTTTGCACCAATATATAACG
TATATGTAAAGGTGTGTTAGTCAAATCTAGTATGATTATTGATTTTTAAT
TCATTATATTTCTGAAAATATTTTGAAAGATCCTTATAATCATATGTGTG
TCTCCCTATTAGGAGCACTGATTAAGTTTCTAGAGTAGAAGGAATTTGTG
CTCATCACCATACATTCTTCTATACTTCAGACTTTATATCCTGTTATGAA
CTATCTATCCAGGTAATAATCAGTATACAAAGTATACAAGAATGGGAAGA
ATCTCAAATCGGGGTCAACTTTGTTCATCTTTGGAATCTGAGATGAAGGC
TGCCAGTATTACTTCTACTATTATGTATACAAATCTCATATTTTATAATA
TTGATTGCAATAATCATTATTTTTCCTTTGCATTTGCGATAGGCCATGTC
CACTGATTCTGTTTCTATACCGATGTTTTTTTTTTCTTTATCCCTTCCTT
ATTCCCCACTCACTTATCTTTCTTGTTACTACATACACTTGTTTTATCCC
TTTCTG
ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTGGTGAATTTTGGCTAATTATTGTGCCAA
AACTGTTAGGAAACTGTTTTTCTTTATTTTTCTTTATTGGATATTTTCTT
TGTTTACATTTCAAATGTTATCCCCTTTCCTAGTTTCCCCTCCAGAAACT
CCCTATCCCTTCCCCCCTCTCCCTGCTCACCAAACCACCCACTCCCACTC
AGTGTTTTTCTTTTAATGTTTAAAGCATTTTCAAGAAGAATTTTTTGTTT
TTGTTTTTGTTTTTGCTTAGCTTTTGATTTAGCTTCTCAGTTATTTTTTA
TTTTTATGAATAAGCCTATTTTGCTCTATGCAGATCATGATCCTCTAATG
GTTTATGACTTCCATCACGCTTCATTACCCCTTTTTACACTTAATTCTCA
TTCTTGTATATCCTTTGTGCTTACATTCCCCACATTCCCCCCCCTCCCCC
CTATTCCCTTTTATCTTGTCTCTTTGTTTCCTTTACTTTCCCCTTTTCCT
CTTTTTTTTTCTCTCTCTTCTTTTCCCTTTCTCTCCCTTCCATTTATTTT
TTTGTCCCTTCCTTCCTTCCTCCTCCTTCTCCTTCCTCCTTATCTTCTCC
CTTCTTTCCTTTTTCCTTCTTCTTCTCTCTTCTCTCTTTCGCTCTTTTCC
CTTCTTCCTTTTCTCTTCTCCCCTTTATATCTCCTACCATGTCCCTCCTT
TATCCACTTTCTTTTATTTCCTTCATCCTATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_i09.b1 MSMg01no433_i09.b1 CHROMAT_FILE:
MSMg01no433_i09.b1 PHD_FILE: MSMg01no433_i09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:38 2005
         (240 letters)



>mm_chr12_35150086_35150726
          Length = 641

 Score =  414 bits (214), Expect = e-120
 Identities = 234/241 (97%), Gaps = 1/241 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tattgtgnttgca-ttttttttattattattttgtttgcatttctttgaactctttgggg 59
           ||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tattgtgtttgcggttttttttattattattttgtttgcatttctttgaactctttgggg 260

                                                                       
Query: 60  tccttgacattttgttctttactttttagtaagacatacttatgttccatgcctagtatc 119
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccttgatattttgttctttactttttagtaagacatacttatgttccatgcctagtatc 320

                                                                       
Query: 120 tttgcaccaatatataacgtatatgtaaaggtgtgttagtcaaatctagtatgattattg 179
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||  ||||
Sbjct: 321 tttgcaccaatatataacatatatgtaaaggtgtgttagtcaaatctagtatgaaaattg 380

                                                                       
Query: 180 atttttaattcattatatttctgaaaatattttgaaagatccttataatcatatgtgtgt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttttaattcattatatttctgaaaatattttgaaagatccttataatcatatgtgtgt 440

            
Query: 240 c 240
           |
Sbjct: 441 c 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 641
Length adjustment: 9
Effective length of query: 231
Effective length of database: 632
Effective search space:   145992
Effective search space used:   145992
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)