BAC Information

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BAC

Clone NameMSMg01-433K12
Chromosome12 (Build37)
Map Location 45,938,263 - 46,115,166
singlet/doubletdoublet
Overlap geneStxbp6
Upstream geneENSMUSG00000066507, LOC100039081, LOC664854, Dnajb9, LOC100039062, Pnpla8, Nrcam, EG620025
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433K12.T7 (MSMg01no433_k12.b1)MSMg01-433K12.TJ (MSMg01no433_k12.g1)
ACCAG525388AG525389
length763806
length of high quality
(start - end)
227 (72 - 298)237 (68 - 304)
definitionCHROMAT_FILE: MSMg01no433_k12.b1 PHD_FILE: MSMg01no433_k12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:48 2005CHROMAT_FILE: MSMg01no433_k12.g1 PHD_FILE: MSMg01no433_k12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,114,940 - 46,115,166)(45,938,263 - 45,938,499)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXATATTTCTAAACCCGCGGNAAT
CCAAAATCATTACCACTACTTCACTATCTCAAGCAGCTGATGAGCATTCC
TTGGCCTTGCCTTGTTTCCTACAGGTTATGCTTTCGGTTTTGCTGGATGG
TAAGATTTGTAAGCCAAGCTGTAAATCTCATACACATTTAAAGGCGCTAC
TAGTAGATATATTTGAGTCTTAGAAACCGACTCCCCAGAGCAATTCAGTG
TCTCCTCATAGTGACCTGGCTATGCACAAACTTGGTTTGTTTGTTCATTC
GCAGAATAGAAGTGCTTTTATTCTTTCTTACGAGTCTAGGCAATTTCTTG
TGAAAATTATTATTTTTCTCATTACCTTTTTCCGACGCCCCTTTGACCAA
TTNATTTTTTCGCCCCCCCCCCTTTAGTCTCTTTTTTCTTTCTCCCCCCC
CTCCCTCTTTTTTTCCCCCCTCCCCCGTTCTTTTCATTTTCCCCTTTTTC
CCCACCCCTACACCTTTTTTTTCTTTCTCTTTCTATTTCCTTTTTCCCCC
CCTCTCTTTTCCCCCTTCCTCCCCTTTTTTCCTCCCCCCTTTTTTCTCCC
CCCCTTCCTTCTCCTATCCCTCTTTTTTTTTTTTTCCCCCTTTTTTATTT
TTTCCCCCTTTTTTTTTCCCCCCCCTTCTTTTACCTTTCCTTCTTTACCT
CTCTCTCCCTTCATTCACTTCTACCCCCTTTCCCCTTCCTTTTCTTTCTC
CCCTTTTTTCCCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCTGCTCATTTCCTTAGTCTATTTATTGATTGG
GTTTAGTTTCTGGCTGGTTAGCATTGTCTAGTTCTGTGTAGTCTATTTTA
GATATTAATTCCCAGTCTCTTAATTCTTTTATACACTAGGATCTAAGATT
TCCACTTTACTTTCAGAGATCTCATTGAAAGGCATTGTCCTGTTATGAAG
ATAGGTTAATAAACAATTTGCATGATATATATTTGGAATTTTTTGAGAGA
TATAATTTCCCTCCATTTACACACGACTTCCCCAATACTCACTATGTATT
TTTTTTTTCGCCTTGCCCTCCTTGTAATATCTTCGTCTCCTGCTCTTATG
TGTCTCGACCACTCTTGCGCCCTTCTCTTTCTTCTCCCGCCTTCTCTCCT
ACCCTCCATCCTTGCCATCCTCCTCCTCCTTGTCGCTCTCCCTTTCTTTC
CTATTCCCCCCCCTACCTCTCCTCGCATCTTCTTTTTCCCTTCGTTATCT
GTTTCCTTCTACCCCTCTTACCATCTCTTGCCTTTCCCTTTCGCTCTATC
TCTCCCTTTCTTCCTCCTTCCTTCCGTTTCTTCCTGATTTCCTATTCATC
CTTCTCTTTTCTTTCTTTTATTTCTTCCCCCTCCGTTTCGCTTCCCGTTT
CCCCATCTCTCCCCTTTTGCCCTTTCCGCTTTTCCGCATCCTATCTCCCT
TTTTCCCGTTTGCTCTTCCCTCTTCCACTCTTATTTCCCTTTTTCCTTTT
CCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_k12.b1 MSMg01no433_k12.b1 CHROMAT_FILE:
MSMg01no433_k12.b1 PHD_FILE: MSMg01no433_k12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:48 2005
         (227 letters)



>mm_chr12_46114740_46115366
          Length = 627

 Score =  431 bits (223), Expect = e-125
 Identities = 226/227 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cactatctcaagcagctgatgagcattccttggccttgccttgtttcctacaggttatgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 cactatctcaagcagctgatgagcattccttggccttgccttgtttcctacaggttatgc 368

                                                                       
Query: 61  tttcggttttgctggatggtaagatttgtaagccaagctgtaaatctcatacacatttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tttcggttttgctggatggtaagatttgtaagccaagctgtaaatctcatacacatttaa 308

                                                                       
Query: 121 aggcgctactagtagatatatttgagtcttagaaaccgactccccagagcaattcagtgt 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 aggtgctactagtagatatatttgagtcttagaaaccgactccccagagcaattcagtgt 248

                                                          
Query: 181 ctcctcatagtgacctggctatgcacaaacttggtttgtttgttcat 227
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 ctcctcatagtgacctggctatgcacaaacttggtttgtttgttcat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 227
Length of database: 627
Length adjustment: 9
Effective length of query: 218
Effective length of database: 618
Effective search space:   134724
Effective search space used:   134724
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no433_k12.g1 MSMg01no433_k12.g1 CHROMAT_FILE:
MSMg01no433_k12.g1 PHD_FILE: MSMg01no433_k12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:48 2005
         (237 letters)



>mm_chr12_45938063_45938699
          Length = 637

 Score =  397 bits (205), Expect = e-115
 Identities = 229/237 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgctcatttccttagtctatttattgattgggtttagtttctggctggttagcattgt 60
           |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 201 tctgctcatttccttagtctatttattgattgggtttagtttctggttggttagtattgt 260

                                                                       
Query: 61  ctagttctgtgtagtctattttagatattaattcccagtctcttaattcttttatacact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 ctagttctgtgtagtctattttagatattaattcccagtctcttaattcttctatacact 320

                                                                       
Query: 121 aggatctaagatttccactttactttcagagatctcattgaaaggcattgtcctgttatg 180
           ||||||||||| |||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 321 aggatctaagacttccactttactttcagagatctcattgaaaggcattgtcctgagatg 380

                                                                    
Query: 181 aagataggttaataaacaatttgcatgatatatatttggaattttttgagagatata 237
           |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 aagataggtttataaacaatttgcatgatatgtatttggaattttttgagagatata 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)