BAC Information

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BAC

Clone NameMSMg01-433O20
Chromosome12 (Build37)
Map Location 16,319,835 - 16,320,177
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC217409, Trib2, LOC100043268, EG432636, LOC100043273
Downstream geneLpin1, Ntsr2, Greb1, E2f6, Rock2, Pqlc3, 2410004P03Rik, EG668514, Kcnf1, LOC100043299, Pdia6, Atp6v1c2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433O20.T7 (MSMg01no433_o20.b1)MSMg01-433O20.TJ (MSMg01no433_o20.g1)
ACCAG525595AG525596
length833780
length of high quality
(start - end)
65 (85 - 149)343 (67 - 409)
definitionCHROMAT_FILE: MSMg01no433_o20.b1 PHD_FILE: MSMg01no433_o20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:10 2005CHROMAT_FILE: MSMg01no433_o20.g1 PHD_FILE: MSMg01no433_o20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CACXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGCGACCGCGGAATT
CTCAGTTNCTCCCTTAGAACATGCTTCGAAAAAAATTTTTAAAGTCCTCA
CGAGTACTGTGCCAATACTCTCCATTATATATATATATATGTATATATGC
ATATGCCTATATATATATGTGGGCGCGTTCCCCCCCCCCCCTTCCCCCCC
CGCGGCTGCCGTTCGCCTTGCCTGTTCGCCCCCCCTGTGTCCCCCCCCCC
GCCCTTTTCGCGCTNCGCCCTCGCGCCCCCGCGCCCTGGTTGGCCCCGCC
CTTTCGCGGCCCCCCCGTTCCTCCCTTTTTTTCTTTCGTGGGCGCGTCGC
GTCCCCCGTCCGTCGCCTCTTCTCCCTCTCCCCTGCCTATCCCGTTGCCC
CGCCCCCCGCCTTTCTCGCCCCCTCGTTTTCCCCCCCCCTCCTGTCCTTT
TTCCCCTTTTTTTTCTTTCTCCCCCCCCCCCCCCTCTTTTTTCTTTCCCC
CCCCCCCCCCCTCTTTGCTCTCTCCCCCTTTTTTCCCCGCGCCCNNCTCC
TTTTTTTCCTTCCCGCCTTCTTTCCACCTCTCCCCCCCCCGCCTATTTTC
CCCCCTTCCCCCCCCTTTTTGCCTCGCCCCCCCTTTTCTTTACCCCCTTC
CCCTTCCCCCTTCCCCTCTCTTTTTTTTTTCTCGCCCCCTTCTCTTTTTT
CTTTTCTCCTCCTTTTCTTTCCCCCCACGCGTCTTTTCCTCTATCCGCAC
GTTTCCCGTCTCCGCCCGCGCTTCGTTGGCCATCTCCCCCCCGTTTCTCC
ATTCCCTTTTGTTTCTCCCCCCTTGTTTCCTTN
ATGGGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAACATTAAGGCCATGGAGGAACACTTCATTGTAA
GTTTGACATCACCCAGTCCCACTTCCTGAATCTAAAGGAATCTTACTTCA
ACCAAGCTGTGCTGGGCATGGATGAGCACAAAGGAGAACTTCCTTGCCAT
AGGACCATGTTAGCTTGAATACAATTAAGTGTCAGAATCAATCACAGATA
TCAAGAGCCTGTCTGTGGCCACCAGAATCTCACACTGCTTACTCCTCCTG
CAGCAGCCATTCCCCCCACCCCTAACCAAGAGCCAGCCATACCACCAACT
AACCCTGTCTGTGTTTCCAGTATATGAGCTTACAAGTACACACCTTTGAC
CAAGTCAACTGTTTGAAAATTGTTCTTTTCACAATTTAATTGGGATATAA
TAAGTACTCTGCATTTATGAGCCCCAGTGAAACATTTTGATACTGTGGCC
CAAAGTGGAATGATTAAATTGGCACAACTATCCCCACCATAACCTCTAGG
GTTTACCTCTTGGGGGGGGATAACTTCCCTCTCCTACAAAAACCTCTAAC
AAAAGATTTAACTTTTTTCCTCCACAATTACTCTCTCCTTTCCCGCTTAT
CACTCTAAATTTATCCCCCCCCCCCCTATCCTTTCCGATCCCTTCCCGAC
CTTTTCCTTTCCTATTTCCCTACCTTCTTCCTTTTCCCGTTTCCTTTCCC
ATTCCCCCCTATTCCCATTTCTCTTCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_o20.g1 MSMg01no433_o20.g1 CHROMAT_FILE:
MSMg01no433_o20.g1 PHD_FILE: MSMg01no433_o20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:10 2005
         (343 letters)



>mm_chr12_16319635_16320377
          Length = 743

 Score =  663 bits (343), Expect = 0.0
 Identities = 343/343 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacattaaggccatggaggaacacttcattgtaagtttgacatcacccagtcccacttcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacattaaggccatggaggaacacttcattgtaagtttgacatcacccagtcccacttcc 260

                                                                       
Query: 61  tgaatctaaaggaatcttacttcaaccaagctgtgctgggcatggatgagcacaaaggag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaatctaaaggaatcttacttcaaccaagctgtgctgggcatggatgagcacaaaggag 320

                                                                       
Query: 121 aacttccttgccataggaccatgttagcttgaatacaattaagtgtcagaatcaatcaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacttccttgccataggaccatgttagcttgaatacaattaagtgtcagaatcaatcaca 380

                                                                       
Query: 181 gatatcaagagcctgtctgtggccaccagaatctcacactgcttactcctcctgcagcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatatcaagagcctgtctgtggccaccagaatctcacactgcttactcctcctgcagcag 440

                                                                       
Query: 241 ccattccccccacccctaaccaagagccagccataccaccaactaaccctgtctgtgttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccattccccccacccctaaccaagagccagccataccaccaactaaccctgtctgtgttt 500

                                                      
Query: 301 ccagtatatgagcttacaagtacacacctttgaccaagtcaac 343
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccagtatatgagcttacaagtacacacctttgaccaagtcaac 543


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space:   245156
Effective search space used:   245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)