Query= MSMg01no434_a04.b1 MSMg01no434_a04.b1 CHROMAT_FILE:
MSMg01no434_a04.b1 PHD_FILE: MSMg01no434_a04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:17 2005
(406 letters)
>mm_chr12_55544699_55545503
Length = 805
Score = 745 bits (385), Expect = 0.0
Identities = 398/403 (98%), Gaps = 3/403 (0%)
Strand = Plus / Minus
Query: 5 gtagaaaagagacagtttctgacctccaaaagttcacagtccaataaagacattagaccg 64
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 605 gtagaaaagagacagtttctgacctccaaaagtt--cagtccaataaagacattagaccc 548
Query: 65 agacaaacgaaggactaacctgggaagctggcaggaccaggctgtttctcagcacactgt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 agacaaacgaaggactaacctgggaagctggcaggaccaggctgtttctcagcacactgt 488
Query: 125 ggccgcacccctttccagtttggagactactctgttctgactgatttcccttgggggcac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ggccgcacccctttccagtttggagactactctgttctgactgatttcccttgggggcac 428
Query: 185 aggttggcaaccgtcattttcaggtttatatctcccttgattaagacac-gggtcaaact 243
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 427 aggttggcaaccgtcattttcaggtttatatctcccttgattaagacacggggtcaaact 368
Query: 244 gaagtagggtctaagtctagttttacatctaaattgtgtaactattaaccacatttactc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gaagtagggtctaagtctagttttacatctaaattgtgtaactattaaccacatttactc 308
Query: 304 gatacactgtaaaatagatacagtttctgccctagatatttgttatttctccgtactggg 363
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 aatacactgtaaaatagatacagtttctgccctagatatttgttatttctccgtactggg 248
Query: 364 agcgtttgaaaccctttatctagatatctgaagtgatgttaag 406
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 agcgtttgaaaccctttatctagatatctgaagtgatgttaag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 805
Length adjustment: 9
Effective length of query: 397
Effective length of database: 796
Effective search space: 316012
Effective search space used: 316012
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no434_a04.g1 MSMg01no434_a04.g1 CHROMAT_FILE:
MSMg01no434_a04.g1 PHD_FILE: MSMg01no434_a04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:17 2005
(192 letters)
>mm_chr12_55334390_55334980
Length = 591
Score = 323 bits (167), Expect = 4e-93
Identities = 182/187 (97%), Gaps = 1/187 (0%)
Strand = Plus / Plus
Query: 1 tttaaagagttcagagggagaataagtttgctaaaaagcagaacaaagagggaggataag 60
|||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||
Sbjct: 201 tttaaagagttcagagggagaataagtttgctaaaaggcaaaacagagagggaggataag 260
Query: 61 aaagagatatactgtgttgggtagttttttgttggctcgaaacaagagggaacctcaact 120
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct: 261 aaagagatatactgtgttgggtaggtttttgttggctc-aaacaagagggaacctcaact 319
Query: 121 gggaaaatgccttcatcagattgccctgtaggtaagtctgggggacattttcttgattaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gggaaaatgccttcatcagattgccctgtaggtaagtctgggggacattttcttgattaa 379
Query: 181 tgattga 187
|||||||
Sbjct: 380 tgattga 386
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 591
Length adjustment: 8
Effective length of query: 184
Effective length of database: 583
Effective search space: 107272
Effective search space used: 107272
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
