BAC Information

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BAC

Clone NameMSMg01-434D13
Chromosome12 (Build37)
Map Location 60,832,154 - 60,832,683
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040183, Sec23a, Sip1, Trappc6b, Pnn, EG544872, Mia2, Mgea6, Fbxo33, LOC665628, LOC238199, LOC665639, LOC665644
Downstream geneEG622488, LOC665665, Ppia-ps12_475.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-434D13.T7 (MSMg01no434_d13.b1)MSMg01-434D13.TJ (MSMg01no434_d13.g1)
ACCAG525820AG525821
length715716
length of high quality
(start - end)
504 (61 - 564)534 (70 - 603)
definitionCHROMAT_FILE: MSMg01no434_d13.b1 PHD_FILE: MSMg01no434_d13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:34 2005CHROMAT_FILE: MSMg01no434_d13.g1 PHD_FILE: MSMg01no434_d13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAATTCAGTA
GCATTTCCAGCATATTTACAAATGATAAGGAAAAAGGAGCTGTCTATATT
TTTTCAAACAATTCTACCTACATCAACCAAATAGACAAATACATGTACGT
GTGTGTACATATATGTACATGTGTGTGCATGTATGTGCATGCATACACAC
TATACCTGTGTCATATGTACATCAATCCTGATGAAGTGGTTTGTGTCATA
TATGTTTTTCTTCAAGCTATTGGTAAATCTTTGAAGAAATATTTTTTGGG
GGTCTGAGGAGTTGTACCAGTTTACAAAGTGCTTGCAGTGAAAGTATGAG
TGCCTGTGTTCAGGCCCCCAGAACCAGCACTGAGGAGGTAGTCACAGGAG
GATCCTGGAGTATCTTGCTATTGTTTGGACAAATTGATGAACTCGGGTTT
CAGTGAGAGACTCTCGCAAAAGAAAAAAAAATTCAGGAGAGGGCTGGGCC
TATTGTTCTTCTATTATCTGTTTTAAATCAGTATAGACCAGATTCTCACT
TCAAATTACAAAAGTGAAAGTGAATAGATTGAAAGTGGATAAGTTACGTG
CCAACCAAGCCTTATGAGCTGAATTTGGATCCTCACAATACTCGTATAGC
TGGACACATTATCCTATCCACTTGTAAAGCCAGTACACTCCCAGGATACA
AGATAATCCTGTTAC
TTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGTGTTATGCAGTGAGCTTTCTTCTGGCTGA
GAGATAGTCACAGACATGGCAATAAGATGTGTTCTTCTACTTGTTATTTG
TTTATGTCAGGAGCTGTGGTTTCCCAGTGATTTTTTTCTGGACCATATTT
AATATCTTTTTTCAGCCTTTAGCAGAACCCAGTAATAAAATACAAAGATG
CTCACAGAGGTGAGTCAAGGCTGACTGTTTGGCTATTGGCACAGACAGTG
GTGCTTTTAGTGGTAAGTATAATATTTTTCAGGGGCAAAGGTTAAACATT
GATCAGATGACAATATAAGCTTAGGCTGTGGTCATCTAGACCCGAGTAGA
GATGTTGGATATATAGGATGCCTTGCTTTCCCTCTGTCTTTAATTTCATT
GGTTTCCATATAAGCCAAAGCGATGTTATGATGGTGTTGAATAATATTAC
ATTAATATTAATATGCTACAACCAACAAACTGCTATCCACGGTCAATGTT
TTGATTACATTGGGCTCACTTGATAACTCAAGATGATCCCTTTTCAATGT
TGTTAACCCTGCCCCACCACATTTTTTTTAAAAAAGGATTTAATGATTCC
CTTTTCTGCTATTGTTAAGCTGTTGCGAGACTAACGCGGATTCTGACAAT
GATTCATGCGGCCTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no434_d13.g1 MSMg01no434_d13.g1 CHROMAT_FILE:
MSMg01no434_d13.g1 PHD_FILE: MSMg01no434_d13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:34 2005
         (534 letters)



>mm_chr12_60831954_60832883
          Length = 930

 Score =  977 bits (505), Expect = 0.0
 Identities = 526/535 (98%), Gaps = 6/535 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtgttatgcagtgagctttcttctggctgagagatagtcacagacatggcaataagatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtgttatgcagtgagctttcttctggctgagagatagtcacagacatggcaataagatg 260

                                                                       
Query: 61  tgttcttctacttgttatttgtttatgtcaggagctgtggtttcccagtgatttttttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgttcttctacttgttatttgtttatgtcaggagctgtggtttcccagtgatttttttct 320

                                                                       
Query: 121 ggaccatatttaatatcttttttcagcctttagcagaacccagtaataaaatacaaagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaccatatttaatatcttttttcagcctttagcagaacccagtaataaaatacaaagat 380

                                                                       
Query: 181 gctcacagaggtgagtcaaggctgactgtttggctattggcacagacagtggtgctttta 240
           |||||||||| |||||||||||||||||    ||||||||||||||||||||||||||||
Sbjct: 381 gctcacagagatgagtcaaggctgactg----gctattggcacagacagtggtgctttta 436

                                                                       
Query: 241 gtggtaagtataatatttttcaggggcaaaggttaaacattgatcagatgacaatataag 300
           |||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gtggtaaggagaa-atttttcaggggcaaaggttaaacattgatcagatgacaatataag 495

                                                                       
Query: 301 cttaggctgtggtcatctagacccgagtagagatgttggatatat-aggatgccttgctt 359
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 496 cttaggctgtggtcatctagacccgagtagagatgttggatatatcaggatgccttgctt 555

                                                                       
Query: 360 tccctctgtctttaatttcattggtttccatataagccaaagcgatgttatgatggtgtt 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tccctctgtctttaatttcattggtttccatataagccaaagcgatgttatgatggtgtt 615

                                                                       
Query: 420 gaataatattacattaatattaatatgctacaaccaacaaactgctatccacggtcaatg 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gaataatattacattaatattaatatgctacaaccaacaaactgctatccacggtcaatg 675

                                                                  
Query: 480 ttttgattacattgggctcacttgataactcaagatgatcccttttcaatgttgt 534
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ttttgattacattgggctcacttgataactcaagatgatcccttttcaatgttgt 730


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 930
Length adjustment: 10
Effective length of query: 524
Effective length of database: 920
Effective search space:   482080
Effective search space used:   482080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)