Query= MSMg01no434_f09.b1 MSMg01no434_f09.b1 CHROMAT_FILE:
MSMg01no434_f09.b1 PHD_FILE: MSMg01no434_f09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:43 2005
(503 letters)
>mm_chr12_120516197_120517099
Length = 903
Score = 959 bits (496), Expect = 0.0
Identities = 502/504 (99%), Gaps = 2/504 (0%)
Strand = Plus / Plus
Query: 1 aactatctggatttatttaaggagaa-gttttaggttgatatttaacctatgtcataaat 59
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 aactatctggatttatttaaggagaaagttttaggttgatatttaacctatgtcataaat 260
Query: 60 aatatctactaacaggcctttatttaaacagagagagtacatttatgcaaaaatttaata 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatatctactaacaggcctttatttaaacagagagagtacatttatgcaaaaatttaata 320
Query: 120 actgctttattttcaccattttaaacactcagttttataataataatcattttcaatttc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actgctttattttcaccattttaaacactcagttttataataataatcattttcaatttc 380
Query: 180 aataagtaatgtaatgttttcctccacaacacatttgtgtaggtcaaacttgctgagtct 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aataagtaatgtaatgttttcctccacaacacatttgtgtaggtcaaacttgctgagtct 440
Query: 240 tttaaaagacaaactctgaagtctggtggcagtagggaagaatgaagatgactgttgttt 299
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttaaaagacaaac-ctgaagtctggtggcagtagggaagaatgaagatgactgttgttt 499
Query: 300 ctgagttcttcagaggggtgtggtgatgtcattacgtaggacaggaattacaaaatagaa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ctgagttcttcagaggggtgtggtgatgtcattacgtaggacaggaattacaaaatagaa 559
Query: 360 caaaggaaagaaaaatcaaagccaagaataagaaatgtctggcctagtattactggatat 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 caaaggaaagaaaaatcaaagccaagaataagaaatgtctggcctagtattactggatat 619
Query: 420 ccaacaaagtttacttaaatcaggatccacacttcacattttcttctatgtggccaataa 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ccaacaaagtttacttaaatcaggatccacacttcacattttcttctatgtggccaataa 679
Query: 480 aagcatgtcataaaaacagtcttt 503
||||||||||||||||||||||||
Sbjct: 680 aagcatgtcataaaaacagtcttt 703
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space: 440249
Effective search space used: 440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no434_f09.g1 MSMg01no434_f09.g1 CHROMAT_FILE:
MSMg01no434_f09.g1 PHD_FILE: MSMg01no434_f09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:43 2005
(464 letters)
>mm_chr12_120664310_120665173
Length = 864
Score = 874 bits (452), Expect = 0.0
Identities = 461/464 (99%)
Strand = Plus / Minus
Query: 1 catagctcagcaccaaagtaaatagatgatgaagactgagattagctgctcatatgaatg 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 664 catagctcagcaccaaagtaaatagatggtgaagactgagattagctgctcatatgaatg 605
Query: 61 tgtatttacccaccattactcatttcaaaagcctctgacacacagacaatctgattcatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 tgtatttacccaccattactcatttcaaaagcctctgacacacagacaatctgattcatc 545
Query: 121 ctggctacatgccatcttagcccatgccatcattcaggtcataccagagacactgctatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 ctggctacatgccatcttagcccatgccatcattcaggtcataccagagacactgctatt 485
Query: 181 agcttactttagggctgacaaggacagctgagattagcacttttggttttgttgaagaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 agcttactttagggctgacaaggacagctgagattagcacttttggttttgttgaagaaa 425
Query: 241 ttagctctgaatgtggggctaaatgaactctattatcttttaaagagtaattgtgtcacc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 ttagctctgaatgtggggctaaatgaactctattatcttttaaagagtaattgtgtcacc 365
Query: 301 tgaacatgtgtaatatggataattgcttcccttttagtacacaggtaccaatgtaacttt 360
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 364 tgaacatgtgtaatatggataattgcttctcttttagtacacaggtaccaatgtaacttt 305
Query: 361 tagaaacaaacagactcaaggaattgggtgagtgaacagatgattacatgaatgaaagag 420
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tagaaataaacagactcaaggaattgggtgagtgaacagatgattacatgaatgaaagag 245
Query: 421 cagcatagactgagcactgcagtgtgacttctgtgagcagggac 464
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 cagcatagactgagcactgcagtgtgacttctgtgagcagggac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space: 387716
Effective search space used: 387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
