Query= MSMg01no434_m20.b1 MSMg01no434_m20.b1 CHROMAT_FILE:
MSMg01no434_m20.b1 PHD_FILE: MSMg01no434_m20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:19 2005
(450 letters)
>mm_chr12_109304160_109305007
Length = 848
Score = 768 bits (397), Expect = 0.0
Identities = 433/447 (96%), Gaps = 6/447 (1%)
Strand = Plus / Minus
Query: 6 attctcaacccactctctcccgactcccttcaggtacgtcccaggctcgttttagaccga 65
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 attctcaacccacactctcccgactcccttcaggtacgtcccaggctcgttttagaccga 589
Query: 66 aagctgagacgtctcatctcttcaggacatgaggctctggggttctaagacacaaaacct 125
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 588 aagctgagacgtctcatctcttcaggacatgaggctctggggctctaagacacaaaacct 529
Query: 126 ctggccctggcctctgtctagttgcaatagaatactgcaccatgattcaggcagcctcct 185
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 ctggccctggcctctgtctggttgcaatagaatactgcaccatgattcaggcagcctcct 469
Query: 186 caccaaccgtggcatagactccagggtcagtccagactaagtgaaccaaggtgagctttg 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 caccaaccgtggcatagactccagggtcagtccagactaagtgaaccaaggtgagctttg 409
Query: 246 aagacccacctgagctctagcctaccagatgtttgtgctttatggaagtgatggagctga 305
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct: 408 aagacccacctgagctctagcctaccaga----cgtgctttatggaggtgatggagctga 353
Query: 306 tggttaactttaatgctcagctttaagcaatctgcaatcactgggaagagagtcctaagg 365
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 352 tggttaactttaatgctcagctttaagcaatccgcaatcactgggaagagagtcctaagg 293
Query: 366 gactcccaggacaggttggcctatggggg-accgtcttagttacatccattgatgtctaa 424
||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 292 gactcccaggataggttggcctatgggggaaccatcttagttacatccattgatgtctaa 233
Query: 425 aattgaccc-taccatccattcccttg 450
||||||||| |||||||||||||||||
Sbjct: 232 aattgacccgtaccatccattcccttg 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 848
Length adjustment: 10
Effective length of query: 440
Effective length of database: 838
Effective search space: 368720
Effective search space used: 368720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no434_m20.g1 MSMg01no434_m20.g1 CHROMAT_FILE:
MSMg01no434_m20.g1 PHD_FILE: MSMg01no434_m20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:19 2005
(495 letters)
>mm_chr12_109152660_109153556
Length = 897
Score = 936 bits (484), Expect = 0.0
Identities = 494/498 (99%), Gaps = 4/498 (0%)
Strand = Plus / Plus
Query: 1 cacacagagacgcctctgtggctcaggaggacatcagtgctaactctccaatgcgatgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacacagagacgcctctgtggctcaggaggacatcagtgctaactctccaatgcgatgct 260
Query: 61 aagacaaagtgctacaattttaaagattgtaatccgctgtacatccacctcccgggaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 aagacaaagtgctacaattttaaagattgtaatccgctgtacatccacctcccgg-aaaa 319
Query: 121 aaaaaatggttttgaaagccacccctcccccccggaaaaaaatcccacatgccacttttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aaaaaatggttttgaaagccacccctcccccccggaaaaaaatcccacatgccacttttc 379
Query: 181 atttcaggacaaagtaaatgatgaaaacgcaaacaactttaaaagtcatttaagtgttgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 atttcaggacaaagtaaatgatgaaaacgcaaacaactttaaaagtcatttaagtgttgg 439
Query: 241 cttcttgacaagaaattacacatgcttagcttaaatttcaaaaaagcagcaccccccc-c 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 440 cttcttgacaagaaattacacatgcttagcttaaatttcaaaaaagcagcacccccccac 499
Query: 300 acacacacacaaaattataatttaaaagatagcttccctctacgtcacttgcgagtcatt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 acacacacacaaaattataatttaaaagatagcttccctctacgtcacttgcgagtcatt 559
Query: 360 gctcagactactactgggttattaaaaaaaaa--tgaagggatggatactcaacaaaatc 417
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 560 gctcagactactactgggttattaaaaaaaaaaatgaagggatggatactcaacaaaatc 619
Query: 418 ttttaaaggaatttaaacagaaataataataataataggtacctgcacgtacatgccaaa 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttttaaaggaatttaaacagaaataataataataataggtacctgcacgtacatgccaaa 679
Query: 478 aaaattacaaaacccaat 495
||||||||||||||||||
Sbjct: 680 aaaattacaaaacccaat 697
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 897
Length adjustment: 10
Effective length of query: 485
Effective length of database: 887
Effective search space: 430195
Effective search space used: 430195
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
