BAC Information

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BAC

Clone NameMSMg01-434O14
Chromosome12 (Build37)
Map Location 41,024,214 - 41,079,140
singlet/doubletdoublet
Overlap geneZfp277
Upstream geneLOC100043148, Arl4a, LOC100043606, Scin, Gm889, Ifrd1, EG629820
Downstream geneDock4, LOC638487, LOC100043157, LOC100043162
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-434O14.T7 (MSMg01no434_o14.b1)MSMg01-434O14.TJ (MSMg01no434_o14.g1)
ACCAG526339AG526340
length729734
length of high quality
(start - end)		570 (40 - 609)522 (71 - 592)
definitionCHROMAT_FILE: MSMg01no434_o14.b1 PHD_FILE: MSMg01no434_o14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:28 2005CHROMAT_FILE: MSMg01no434_o14.g1 PHD_FILE: MSMg01no434_o14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,024,214 - 41,024,780)(41,078,619 - 41,079,140)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TTANACTTACCCATAAGTAGAGAGATTAGTGTGATGAGTGCTCACTTGTA
GGGTTAAAGAGTCCTGACTCACTTCCAGGTTTTAAAAATTCACCAATCCC
TGATCTCAAAAACCCACCAATCCCTGAGTGTGCCCCACCCATCCCTACTC
TGGAACCCCAACACTCATAAACCCTGTATAAAGTCTGCCTCCTGCTCAGT
TCTTTGCTCCTTCTTGTCTTTCTTGTCCAAGCAGAGGCAGCCAGCTACGC
TTTTGTGACTTTCCCAGTGAATCTCTTGTGTGAGGTTTGCTGTGTGCTGT
GAGTCTGTGGTATTCGTTGGCTCCCAGCTGCCAAGATACCTTTCCCTTCA
GAGCTGCAACGGCTGCACTGGCGAAACCTTTCCCTGCCACTTCCCATGAG
GAAACACCAAGATGTGAAGTGTGAAGTCTAGGGATACGAGAAACAATATT
TTAAAGTCCCTTGAAGTTTGAGAAGCTCTTCTCTGTGCTACTTGCTGCAG
ATATGCAGTCTCTACTGGACATTCTCTGAACTTATTTTTACCAGAATCCT
AATCTTTTATTTGTGAAGAATTTTTAAATCTGTTTTCTTATTTTCTCTCC
AAATTCCAGTTAGACTTGGAACTGTGTGGGTTCCCCCATGATTAAGTTTT
CAAAAACTTGATGCAAAATATTGTGTATN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTGTGAGAATGGGGTTGTAGTTTTCTAAAC
TTTTCAGAAGGCTTCTAAAACGCTTAGATAAATTACAGGTAAACGCCACT
CCAAGAGCAGCTGCTGCCTTGTGCCAGCACATACCTGATTCATGATCCAT
CCACCTTTAAACCTAAATTAGTGTAATTTACTGTGCATTTCTGATCCCTG
CACAGTGATGTTGCACAAAAGGACTGTGATAAGAAAAGATAAGTTGTGGC
TTAATGAGATGCTCAGAAATGTCAGACAAAACAGGAGGAGCTGATGTTAT
TAGCCTACCTCAGTTTGAGTCGATTAGAAGCCAGTTTCAATAGCCTATAT
AATGCTCACCTGTTCAGATCCACTCCCTGAGGATCTCGGAGCATCTGGTA
CTTGCCTCTCATGCTCTCTCACCATGTTGCACCCAGTCTGTTTGCCGGGT
GCACTCCAGCCATCCTGGGTGTCTCTGTAGCCCACACACTCCAGGCTCTT
CTGAGCTCCTCATGCTACTGTTTGTCCCACTTGCTGTAGTGCTGTCCAGA
ATTGCTGTACTGGCTGGTTTTGGGTGTCAACTTTACACAGGCTGGAGATA
TCACATAGAAAGTATCTTTCGCTTGTGGAAAGGCCTTCTTGATATCCCAC
CTGGAAGCATTTTCTCATCTATGGGTCTGGGCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no434_o14.b1 MSMg01no434_o14.b1 CHROMAT_FILE:
MSMg01no434_o14.b1 PHD_FILE: MSMg01no434_o14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:28 2005
         (570 letters)



>mm_chr12_41024011_41024980
          Length = 970

 Score =  959 bits (496), Expect = 0.0
 Identities = 549/567 (96%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctttanacttacccataagtagagagattagtgtgatgagtgctcacttgtagg 63
           ||||||||||| || || ||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctttaaacctagccataaaaagagagattagtgtgatgagtgctcacttgtagg 263

                                                                       
Query: 64  gttaaagagtcctgactcacttccaggttttaaaaattcaccaatccctgatctcaaaaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gttaaagagtcctgactcacttccaggttttaaaaattcaccaatccctgatctcaaaaa 323

                                                                       
Query: 124 cccaccaatccctgagtgtgccccacccatccctactctggaaccccaacactcataaac 183
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 324 cccaccaatccctgagtgtgccccacccatccctaccctggaaccccaacactcataaac 383

                                                                       
Query: 184 cctgtataaagtctgcctcctgctcagttctttgctccttcttgtctttcttgtccaagc 243
           ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 384 cctgtataaagtctgcctcctgctccgttctttgttccttcttgtctttcttgtccaagc 443

                                                                       
Query: 244 agaggcagccagctacgcttttgtgactttcccagtgaatctcttgtgtgaggtttgctg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agaggcagccagctacgcttttgtgactttcccagtgaatctcttgtgtgaggtttgctg 503

                                                                       
Query: 304 tgtgctgtgagtctgtggtattcgttggctcccagctgccaagatacctttcccttcaga 363
           ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 504 tgtgccgtgagtctgtggtattcgttggctcccagctgccacgatacctttcccttcaga 563

                                                                       
Query: 364 gctgcaacggctgcactggcgaaacctttccctgccacttcccatgaggaaacaccaaga 423
           |||| | |||||||||||| |||||| ||||||||||||||||||| |||||||||||||
Sbjct: 564 gctgtaccggctgcactggggaaaccgttccctgccacttcccatggggaaacaccaaga 623

                                                                       
Query: 424 tgtgaagtgtgaagtctagggatacgagaaacaatattttaaagtcccttgaagtttgag 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tgtgaagtgtgaagtctagggatacgagaaacaatattttaaagtcccttgaagtttgag 683

                                                                       
Query: 484 aagctcttctctgtgctacttgctgcagatatgcagtctctactggacattctctgaact 543
           |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aagcccttctctgtgctatttgctgcagatatgcagtctctactggacattctctgaact 743

                                      
Query: 544 tatttttaccagaatcctaatctttta 570
           |||||||||| ||||||||||||||||
Sbjct: 744 tatttttacccgaatcctaatctttta 770


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space:   537600
Effective search space used:   537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no434_o14.g1 MSMg01no434_o14.g1 CHROMAT_FILE:
MSMg01no434_o14.g1 PHD_FILE: MSMg01no434_o14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:28 2005
         (522 letters)



>mm_chr12_41078419_41079340
          Length = 922

 Score = 1002 bits (518), Expect = 0.0
 Identities = 521/522 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgtgagaatggggttgtagttttctaaacttttcagaaggcttctaaaacgcttagata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 ttgtgagaatggggttgtagttttctaaacttttcagaaggcttctaaaacgcttagata 663

                                                                       
Query: 61  aattacaggtaaacgccactccaagagcagctgctgccttgtgccagcacatacctgatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 aattacaggtaaacgccactccaagagcagctgctgccttgtgccagcacatacctgatt 603

                                                                       
Query: 121 catgatccatccacctttaaacctaaattagtgtaatttactgtgcatttctgatccctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 catgatccatccacctttaaacctaaattagtgtaatttactgtgcatttctgatccctg 543

                                                                       
Query: 181 cacagtgatgttgcacaaaaggactgtgataagaaaagataagttgtggcttaatgagat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 cacagtgatgttgcacaaaaggactgtgataagaaaagataagttgtggcttaatgagat 483

                                                                       
Query: 241 gctcagaaatgtcagacaaaacaggaggagctgatgttattagcctacctcagtttgagt 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gctcagaaatggcagacaaaacaggaggagctgatgttattagcctacctcagtttgagt 423

                                                                       
Query: 301 cgattagaagccagtttcaatagcctatataatgctcacctgttcagatccactccctga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 cgattagaagccagtttcaatagcctatataatgctcacctgttcagatccactccctga 363

                                                                       
Query: 361 ggatctcggagcatctggtacttgcctctcatgctctctcaccatgttgcacccagtctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ggatctcggagcatctggtacttgcctctcatgctctctcaccatgttgcacccagtctg 303

                                                                       
Query: 421 tttgccgggtgcactccagccatcctgggtgtctctgtagcccacacactccaggctctt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tttgccgggtgcactccagccatcctgggtgtctctgtagcccacacactccaggctctt 243

                                                     
Query: 481 ctgagctcctcatgctactgtttgtcccacttgctgtagtgc 522
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ctgagctcctcatgctactgtttgtcccacttgctgtagtgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space:   466944
Effective search space used:   466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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