BAC Information

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BAC

Clone NameMSMg01-435I09
Chromosome12 (Build37)
Map Location 97,336,869 - 97,337,107
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667688, Flrt2, 1700019M22Rik
Downstream geneLOC100039664, EG628277
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435I09.T7 (MSMg01no435_i09.b1)MSMg01-435I09.TJ (MSMg01no435_i09.g1)
ACCAG526808AG526809
length780804
length of high quality
(start - end)
44 (74 - 117)239 (76 - 314)
definitionCHROMAT_FILE: MSMg01no435_i09.b1 PHD_FILE: MSMg01no435_i09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:18 2005CHROMAT_FILE: MSMg01no435_i09.g1 PHD_FILE: MSMg01no435_i09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCG
GAATTCATTCTTTCTCCTTCAAGTCCAGTAAACTTAATATAATAAATCAT
TCTAAAATATTGAGCAGAGTGTTTTGGCTTTATTTTTATTATTAACTCTA
TTCCATTTCAATTGTAGAAATCATGTATCTTTCCAGTTTAGAAAGAGAAT
ACTTTCTAGCATCATGCTTGAATATTTAACTCAATAACAGAAACTGCTTG
CTATGATCATTTGGCATAAAGGTGCTAATAGCCATTCACAGAAAATTGCA
TTCTGCTTCTTGAATATTTTTTTCCATATTTCTATATATTACCTCTTTCA
AAATACATGCACAGTATAATGTATTCCTCATTATTGAAAGTATGTGATGA
TAAAATTCTTTATATTACTCCACGTTTCTATGCATACTTATTTGCCCCAA
TTTCGCTTTTTAATTTCCGATGTGCTCTTACATCTGAGCACCTCTTGCCC
TATATCCGTTCCCTATTCTTTTGCTCCTCTTTTTCTTATCCCTTCTTTTT
CCCCTTTCTCTCCTTTCCTTTATTCCCCCTTTCTTTCCTTTTTTCTCTTT
CCCTTTTCTACCCATTATCTTCTTTTTCTTTCCCCTCCTCTCTATCCTCC
CCTTTTTCTCTTTCCCTCCCTTTCCACCCCCCTATCATTTTTTTTTTCTT
TTCCCCCTTTTCTTTTATCCCCTTTTTTTTCCTCCTCTCCCCTTTTTTTC
CCTTTATCCCTTCTTCTCCCTTTTTTCCCC
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAGAGGGACAATAAATATATTCATT
CTTGTCTCACCCTGAGGTTAAAACTAAATATAATATTTATAAAATGAATG
TTTTATACATGCTGAAATTCACACTTTTCCTATTATGGTTAGGAAGCCAA
ATTGTGCAAGTCATAGCTCACTGTATTTGACATTTGTGTACATGATATGG
AAATGTTCATCTATTTGTGCAAATATACCAACATCTCCGTGCAGAAGGAT
GAAAGATTACGCACTGTTATTTTTTGTTATTCTCACATACACACAGGCTT
GTGCAGCTGAATCAGTGCGACCATTTATATACAGCACTTATTATTTTTGG
CTTTGCATTTTCACCGCATCCCTGTATATGTTCACCCATAATTTCTTGAT
GTATACAAATATTCTCCCCTTTTTTTTCCCCGCCTCCCCAATTTTTTCCC
CTTTTCTTCCTTTTCCCCACATTTTTTTTCTTTTCCCCTTTTTCTTTTAT
TTTTTCCTTTCTCTTTTTTCCTTTTTTCCCCCTTTTTTTTTTTTTTTTTT
TTTACCCCTTTTTCTTTTTTTCTACCACTCCTCCTCCATTTTATTTTTCT
CTATCCCTTTCCCCCCTTTTTTCTATATACCCTTATAAATACTTCTTACA
CTATCACTATATATTCCTTATCTATTACCCTCTCTTTTTTATTTTTTTTT
CCCCCCCCCACCTTTTTTTTTTTTCATCCATCTTTCCACTTTTTTTTCTT
TTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_i09.g1 MSMg01no435_i09.g1 CHROMAT_FILE:
MSMg01no435_i09.g1 PHD_FILE: MSMg01no435_i09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:18 2005
         (239 letters)



>mm_chr12_97336599_97337237
          Length = 639

 Score =  455 bits (235), Expect = e-132
 Identities = 238/239 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagagggacaataaatatattcattcttgtctcaccctgaggttaaaactaaatataata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 aagagggacaataaatatattcattcttgtctcaccctgaggttaaaactaaatataata 450

                                                                       
Query: 61  tttataaaatgaatgttttatacatgctgaaattcacacttttcctattatggttaggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tttataaaatgaatgttttatacatgctgaaattcacacttttcctattatggttaggaa 390

                                                                       
Query: 121 gccaaattgtgcaagtcatagctcactgtatttgacatttgtgtacatgatatggaaatg 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gccaaatagtgcaagtcatagctcactgtatttgacatttgtgtacatgatatggaaatg 330

                                                                      
Query: 181 ttcatctatttgtgcaaatataccaacatctccgtgcagaaggatgaaagattacgcac 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ttcatctatttgtgcaaatataccaacatctccgtgcagaaggatgaaagattacgcac 271


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)