Query= MSMg01no435_k10.b1 MSMg01no435_k10.b1 CHROMAT_FILE:
MSMg01no435_k10.b1 PHD_FILE: MSMg01no435_k10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:28 2005
(463 letters)
>mm_chr12_96255585_96256450
Length = 866
Score = 690 bits (357), Expect = 0.0
Identities = 438/467 (93%), Gaps = 12/467 (2%)
Strand = Plus / Plus
Query: 4 ggaattcaaggtttctgcctaagcatagtaaaagcaatatacagcaaaccaacagc-caa 62
||||||||||| || ||||||||||||| ||||||||||||||||||||||||| | |||
Sbjct: 203 ggaattcaaggcttatgcctaagcatagcaaaagcaatatacagcaaaccaaca-cacaa 261
Query: 63 ta--cagaattaaacagagagaaatttaaagcaatcccactaaaatcacg-ctacaatac 119
|| | |||||||| ||||||||||||||||||||||| || ||||| | |||||||||
Sbjct: 262 tatcc--aattaaacggagagaaatttaaagcaatcccattataatca-gtctacaatac 318
Query: 120 aaggctatctctcttcctatctattcaatatagtactcaaagttctagtttgagcaataa 179
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 aaggctatctctctccctatctattcaatatagtactcaaagttctagtttgagcaataa 378
Query: 180 gacaacaaaagaatatcaaggggatacaaattgtaaaggaagaagtccaaggtattacaa 239
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 379 gacaacaaaagaatatcaaggggatacaaattggaaaggaagaagtccaaggtattaaaa 438
Query: 240 ttttt-ataagtgaatattcaggttacattttattattgttaagaaagcttagcacttat 298
||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 439 ttttttataagtgaacattcaggttacattttattattgttaagaaaacttagcacttat 498
Query: 299 ttttgtctcttatgatcaatttattaatatgttctacaagaaatttaccacatctattac 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ttttgtctcttatgatcaatttattaatatgttctacaagaaatttaccacatctattag 558
Query: 359 aagaatacattctctgagaaggatagtccctggtgat-tt--ttatactttaacaaaaat 415
|||||||||||||||||||||||||||||| |||||| || |||||||||| |||||||
Sbjct: 559 aagaatacattctctgagaaggatagtccccggtgatcttctttatactttatcaaaaat 618
Query: 416 aagttatttgcatggtaggagtgagaagccctggagaagggatgcac 462
|||||||||||||| |||||||||||||||||| |||| ||||||||
Sbjct: 619 aagttatttgcatgttaggagtgagaagccctgaagaacggatgcac 665
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 866
Length adjustment: 10
Effective length of query: 453
Effective length of database: 856
Effective search space: 387768
Effective search space used: 387768
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no435_k10.g1 MSMg01no435_k10.g1 CHROMAT_FILE:
MSMg01no435_k10.g1 PHD_FILE: MSMg01no435_k10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:28 2005
(177 letters)
>mm_chr12_96436415_96436993
Length = 579
Score = 288 bits (149), Expect = 1e-82
Identities = 171/179 (95%), Gaps = 2/179 (1%)
Strand = Plus / Minus
Query: 1 cattatct--aaaaacacaaaactaatgaatttactaaaagcttaagtgagaatgcataa 58
|||||||| ||||| | ||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 379 cattatctaaaaaaaaaaaaaactaatgaatttactaaaagcttaggtgaaaatgcataa 320
Query: 59 attgcttgcagggaaagaagcgatggaggacttagggctaagaaagtttcttcaaatcaa 118
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 actgcttgcagggaaagaagcgatggaggacttagggctaagaaagtttcttcaaatcaa 260
Query: 119 tttttgttttcgcttttaactctccccttacttcttccttgcaataggattatctctag 177
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 259 tttttgttttcgcttttaactctccccttacttcttctttgcaataggattatctctag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 177
Length of database: 579
Length adjustment: 8
Effective length of query: 169
Effective length of database: 571
Effective search space: 96499
Effective search space used: 96499
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
